31 items (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	capn9	Calpain-2 catalytic subunit; Belongs to the peptidase C2 family. (688 aa)
	LOC105930200	Calpain 5a; Belongs to the peptidase C2 family. (637 aa)
	LOC105929185	Cathepsin F; Belongs to the peptidase C1 family. (471 aa)
	LOC105919907	Calpain-5; Belongs to the peptidase C2 family. (642 aa)
	LOC105939571	Calpain 3a, (p94); Belongs to the peptidase C2 family. (668 aa)
	ENSFHEP00000025827	Cathepsin S, ortholog 1; Belongs to the peptidase C1 family. (342 aa)
	ctso	Cathepsin O; Belongs to the peptidase C1 family. (328 aa)
	ENSFHEP00000024526	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (189 aa)
	LOC105920176	Calpain 2, (m/II) large subunit b; Belongs to the peptidase C2 family. (697 aa)
	LOC105923306	Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family. (667 aa)
	capn15	Calpain 15; Belongs to the peptidase C2 family. (1205 aa)
	LOC105919098	Uncharacterized protein; Belongs to the peptidase C2 family. (933 aa)
	LOC105930766	Calpain 3b; Belongs to the peptidase C2 family. (770 aa)
	ENSFHEP00000019902	Uncharacterized protein; Belongs to the peptidase C1 family. (335 aa)
	LOC105919722	Cathepsin Ba; Belongs to the peptidase C1 family. (379 aa)
	LOC105920350	Calpain 5b; Belongs to the peptidase C2 family. (589 aa)
	LOC105931966	Zgc:103438; Belongs to the peptidase C1 family. (551 aa)
	LOC105921155	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (698 aa)
	LOC105921154	Calpain-3; Belongs to the peptidase C2 family. (778 aa)
	ctss	Cathepsin S; Belongs to the peptidase C1 family. (337 aa)
	LOC105936595	Cathepsin K; Belongs to the peptidase C1 family. (330 aa)
	ENSFHEP00000007174	Uncharacterized protein; Belongs to the peptidase C1 family. (327 aa)
	LOC105927681	Cathepsin L.1; Belongs to the peptidase C1 family. (334 aa)
	LOC105939129	Calpain 12; Belongs to the peptidase C2 family. (659 aa)
	LOC105923339	Uncharacterized protein; Belongs to the peptidase C2 family. (659 aa)
	LOC105923340	Uncharacterized protein; Belongs to the peptidase C2 family. (649 aa)
	ctsc	Cathepsin C; Belongs to the peptidase C1 family. (463 aa)
	capn10	Calpain 10; Belongs to the peptidase C2 family. (701 aa)
	ctsh	Uncharacterized protein; Belongs to the peptidase C1 family. (357 aa)
	LOC105929532	Cathepsin Bb; Belongs to the peptidase C1 family. (330 aa)
	LOC105928846	Cathepsin 12; Belongs to the peptidase C1 family. (330 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000007174	ENSFHEP00000025827	ENSFHEP00000007174	ENSFHEP00000025827	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin S, ortholog 1; Belongs to the peptidase C1 family.	0.490
ENSFHEP00000007174	LOC105919722	ENSFHEP00000007174	ENSFHEP00000019543	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.624
ENSFHEP00000007174	LOC105928846	ENSFHEP00000007174	ENSFHEP00000000362	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin 12; Belongs to the peptidase C1 family.	0.643
ENSFHEP00000007174	LOC105929185	ENSFHEP00000007174	ENSFHEP00000031016	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.654
ENSFHEP00000007174	LOC105929532	ENSFHEP00000007174	ENSFHEP00000000496	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Bb; Belongs to the peptidase C1 family.	0.623
ENSFHEP00000007174	ctsc	ENSFHEP00000007174	ENSFHEP00000002491	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin C; Belongs to the peptidase C1 family.	0.605
ENSFHEP00000007174	ctsh	ENSFHEP00000007174	ENSFHEP00000001836	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.655
ENSFHEP00000007174	ctso	ENSFHEP00000007174	ENSFHEP00000025450	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.636
ENSFHEP00000019902	ENSFHEP00000025827	ENSFHEP00000019902	ENSFHEP00000025827	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin S, ortholog 1; Belongs to the peptidase C1 family.	0.494
ENSFHEP00000019902	LOC105919722	ENSFHEP00000019902	ENSFHEP00000019543	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.689
ENSFHEP00000019902	LOC105927681	ENSFHEP00000019902	ENSFHEP00000005849	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin L.1; Belongs to the peptidase C1 family.	0.902
ENSFHEP00000019902	LOC105928846	ENSFHEP00000019902	ENSFHEP00000000362	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin 12; Belongs to the peptidase C1 family.	0.897
ENSFHEP00000019902	LOC105929185	ENSFHEP00000019902	ENSFHEP00000031016	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.652
ENSFHEP00000019902	LOC105929532	ENSFHEP00000019902	ENSFHEP00000000496	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Bb; Belongs to the peptidase C1 family.	0.631
ENSFHEP00000019902	ctsc	ENSFHEP00000019902	ENSFHEP00000002491	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin C; Belongs to the peptidase C1 family.	0.630
ENSFHEP00000019902	ctsh	ENSFHEP00000019902	ENSFHEP00000001836	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.648
ENSFHEP00000019902	ctso	ENSFHEP00000019902	ENSFHEP00000025450	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.631
ENSFHEP00000024526	LOC105920176	ENSFHEP00000024526	ENSFHEP00000024480	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Calpain 2, (m/II) large subunit b; Belongs to the peptidase C2 family.	0.450
ENSFHEP00000024526	LOC105921154	ENSFHEP00000024526	ENSFHEP00000012037	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Calpain-3; Belongs to the peptidase C2 family.	0.464
ENSFHEP00000024526	LOC105921155	ENSFHEP00000024526	ENSFHEP00000012069	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.466