(6 nodes) Lysosome-associated membrane glycoprotein network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lamp3	Uncharacterized protein. (211 aa)
	lamp1	Lysosomal associated membrane protein 1a. (421 aa)
	LOC105927558	Lysosomal associated membrane protein 1. (253 aa)
	lamp2	Lysosomal-associated membrane protein 2. (457 aa)
	ENSFHEP00000020564	Uncharacterized protein. (232 aa)
	LAMP5	Lysosomal associated membrane protein family member 5. (274 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000020564	lamp1	ENSFHEP00000020564	ENSFHEP00000008617	Uncharacterized protein.	Lysosomal associated membrane protein 1a.	0.899
ENSFHEP00000020564	lamp3	ENSFHEP00000020564	ENSFHEP00000002477	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC105927558	lamp1	ENSFHEP00000012504	ENSFHEP00000008617	Lysosomal associated membrane protein 1.	Lysosomal associated membrane protein 1a.	0.948
LOC105927558	lamp2	ENSFHEP00000012504	ENSFHEP00000016095	Lysosomal associated membrane protein 1.	Lysosomal-associated membrane protein 2.	0.998
lamp1	ENSFHEP00000020564	ENSFHEP00000008617	ENSFHEP00000020564	Lysosomal associated membrane protein 1a.	Uncharacterized protein.	0.899
lamp1	LOC105927558	ENSFHEP00000008617	ENSFHEP00000012504	Lysosomal associated membrane protein 1a.	Lysosomal associated membrane protein 1.	0.948
lamp1	lamp2	ENSFHEP00000008617	ENSFHEP00000016095	Lysosomal associated membrane protein 1a.	Lysosomal-associated membrane protein 2.	0.998
lamp2	LOC105927558	ENSFHEP00000016095	ENSFHEP00000012504	Lysosomal-associated membrane protein 2.	Lysosomal associated membrane protein 1.	0.998
lamp2	lamp1	ENSFHEP00000016095	ENSFHEP00000008617	Lysosomal-associated membrane protein 2.	Lysosomal associated membrane protein 1a.	0.998
lamp2	lamp3	ENSFHEP00000016095	ENSFHEP00000002477	Lysosomal-associated membrane protein 2.	Uncharacterized protein.	0.759
lamp3	ENSFHEP00000020564	ENSFHEP00000002477	ENSFHEP00000020564	Uncharacterized protein.	Uncharacterized protein.	0.901
lamp3	lamp2	ENSFHEP00000002477	ENSFHEP00000016095	Uncharacterized protein.	Lysosomal-associated membrane protein 2.	0.759