(29 nodes) Tudor domain network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFHEP00000002293	Uncharacterized protein. (613 aa)
	tdrkh	Tudor and KH domain containing. (550 aa)
	arid4b	Translocase of outer mitochondrial membrane 20. (1295 aa)
	snd1	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (931 aa)
	arid4a	AT rich interactive domain 4A (RBP1-like). (1412 aa)
	LOC105918896	Si:dkeyp-93d12.1. (1419 aa)
	ENSFHEP00000006954	PHD finger protein 19. (267 aa)
	LOC105921440	Uncharacterized protein. (1036 aa)
	tdrd9	Tudor domain containing 9. (1131 aa)
	ENSFHEP00000007845	Tudor domain containing 1. (902 aa)
	LOC105922693	Uncharacterized protein. (890 aa)
	LOC105921259	Uncharacterized protein. (1043 aa)
	tdrd3	Tudor domain containing 3. (786 aa)
	zgpat	Zinc finger, CCCH-type with G patch domain. (561 aa)
	lbr	Lamin-B receptor. (623 aa)
	LOC105929275	Tudor domain containing 7 a. (1172 aa)
	LOC105936042	PHD finger protein 1. (480 aa)
	rnf17	Ring finger protein 17. (1581 aa)
	LOC105939984	Lysine (K)-specific demethylase 4B. (1220 aa)
	ercc6l2	Excision repair cross-complementation group 6-like 2. (1538 aa)
	ENSFHEP00000018388	A kinase (PRKA) anchor protein 1b. (777 aa)
	ENSFHEP00000020270	SET domain bifurcated histone lysine methyltransferase 1b. (1263 aa)
	LOC105916739	Uncharacterized protein. (1367 aa)
	LOC105933877	Lysine (K)-specific demethylase 4A, genome duplicate b. (1148 aa)
	mtf2	Metal response element binding transcription factor 2. (619 aa)
	LOC105926863	Survival of motor neuron 1, telomeric. (276 aa)
	LOC105922510	PHD finger protein 20, a. (1001 aa)
	smndc1	Survival motor neuron domain containing 1. (238 aa)
	LOC105936998	Tudor domain containing 6. (2254 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000002293	ENSFHEP00000018388	ENSFHEP00000002293	ENSFHEP00000018388	Uncharacterized protein.	A kinase (PRKA) anchor protein 1b.	0.638
ENSFHEP00000002293	LOC105921440	ENSFHEP00000002293	ENSFHEP00000002084	Uncharacterized protein.	Uncharacterized protein.	0.621
ENSFHEP00000002293	rnf17	ENSFHEP00000002293	ENSFHEP00000013328	Uncharacterized protein.	Ring finger protein 17.	0.527
ENSFHEP00000002293	tdrd3	ENSFHEP00000002293	ENSFHEP00000008337	Uncharacterized protein.	Tudor domain containing 3.	0.492
ENSFHEP00000002293	tdrd9	ENSFHEP00000002293	ENSFHEP00000007599	Uncharacterized protein.	Tudor domain containing 9.	0.692
ENSFHEP00000002293	tdrkh	ENSFHEP00000002293	ENSFHEP00000002735	Uncharacterized protein.	Tudor and KH domain containing.	0.405
ENSFHEP00000007845	ENSFHEP00000018388	ENSFHEP00000007845	ENSFHEP00000018388	Tudor domain containing 1.	A kinase (PRKA) anchor protein 1b.	0.587
ENSFHEP00000007845	LOC105921440	ENSFHEP00000007845	ENSFHEP00000002084	Tudor domain containing 1.	Uncharacterized protein.	0.544
ENSFHEP00000007845	tdrd3	ENSFHEP00000007845	ENSFHEP00000008337	Tudor domain containing 1.	Tudor domain containing 3.	0.444
ENSFHEP00000007845	tdrd9	ENSFHEP00000007845	ENSFHEP00000007599	Tudor domain containing 1.	Tudor domain containing 9.	0.658
ENSFHEP00000007845	tdrkh	ENSFHEP00000007845	ENSFHEP00000002735	Tudor domain containing 1.	Tudor and KH domain containing.	0.686
ENSFHEP00000018388	ENSFHEP00000002293	ENSFHEP00000018388	ENSFHEP00000002293	A kinase (PRKA) anchor protein 1b.	Uncharacterized protein.	0.638
ENSFHEP00000018388	ENSFHEP00000007845	ENSFHEP00000018388	ENSFHEP00000007845	A kinase (PRKA) anchor protein 1b.	Tudor domain containing 1.	0.587
ENSFHEP00000018388	tdrd9	ENSFHEP00000018388	ENSFHEP00000007599	A kinase (PRKA) anchor protein 1b.	Tudor domain containing 9.	0.542
ENSFHEP00000018388	tdrkh	ENSFHEP00000018388	ENSFHEP00000002735	A kinase (PRKA) anchor protein 1b.	Tudor and KH domain containing.	0.511
ENSFHEP00000020270	LOC105922510	ENSFHEP00000020270	ENSFHEP00000032412	SET domain bifurcated histone lysine methyltransferase 1b.	PHD finger protein 20, a.	0.733
ENSFHEP00000020270	arid4a	ENSFHEP00000020270	ENSFHEP00000003834	SET domain bifurcated histone lysine methyltransferase 1b.	AT rich interactive domain 4A (RBP1-like).	0.448
ENSFHEP00000020270	arid4b	ENSFHEP00000020270	ENSFHEP00000002974	SET domain bifurcated histone lysine methyltransferase 1b.	Translocase of outer mitochondrial membrane 20.	0.448
ENSFHEP00000020270	tdrd9	ENSFHEP00000020270	ENSFHEP00000007599	SET domain bifurcated histone lysine methyltransferase 1b.	Tudor domain containing 9.	0.570
LOC105918896	LOC105921440	ENSFHEP00000005189	ENSFHEP00000002084	Si:dkeyp-93d12.1.	Uncharacterized protein.	0.544