(7 nodes) Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pc	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1131 aa)
	cps1	Carbamoyl-phosphate synthase 1, mitochondrial. (1382 aa)
	acacb	Acetyl-CoA carboxylase beta. (2298 aa)
	pcca	Propionyl-CoA carboxylase subunit alpha. (711 aa)
	cad	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase. (2160 aa)
	mccc1	Methylcrotonoyl-CoA carboxylase 1 (alpha). (698 aa)
	LOC105927771	Acetyl-CoA carboxylase alpha. (2337 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC105927771	acacb	ENSFHEP00000002430	ENSFHEP00000028758	Acetyl-CoA carboxylase alpha.	Acetyl-CoA carboxylase beta.	0.953
LOC105927771	cad	ENSFHEP00000002430	ENSFHEP00000009038	Acetyl-CoA carboxylase alpha.	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	0.698
LOC105927771	cps1	ENSFHEP00000002430	ENSFHEP00000010650	Acetyl-CoA carboxylase alpha.	Carbamoyl-phosphate synthase 1, mitochondrial.	0.698
LOC105927771	mccc1	ENSFHEP00000002430	ENSFHEP00000002486	Acetyl-CoA carboxylase alpha.	Methylcrotonoyl-CoA carboxylase 1 (alpha).	0.839
LOC105927771	pc	ENSFHEP00000002430	ENSFHEP00000027060	Acetyl-CoA carboxylase alpha.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.885
LOC105927771	pcca	ENSFHEP00000002430	ENSFHEP00000010428	Acetyl-CoA carboxylase alpha.	Propionyl-CoA carboxylase subunit alpha.	0.839
acacb	LOC105927771	ENSFHEP00000028758	ENSFHEP00000002430	Acetyl-CoA carboxylase beta.	Acetyl-CoA carboxylase alpha.	0.953
acacb	cad	ENSFHEP00000028758	ENSFHEP00000009038	Acetyl-CoA carboxylase beta.	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	0.698
acacb	cps1	ENSFHEP00000028758	ENSFHEP00000010650	Acetyl-CoA carboxylase beta.	Carbamoyl-phosphate synthase 1, mitochondrial.	0.698
acacb	mccc1	ENSFHEP00000028758	ENSFHEP00000002486	Acetyl-CoA carboxylase beta.	Methylcrotonoyl-CoA carboxylase 1 (alpha).	0.839
acacb	pc	ENSFHEP00000028758	ENSFHEP00000027060	Acetyl-CoA carboxylase beta.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.885
acacb	pcca	ENSFHEP00000028758	ENSFHEP00000010428	Acetyl-CoA carboxylase beta.	Propionyl-CoA carboxylase subunit alpha.	0.839
cad	LOC105927771	ENSFHEP00000009038	ENSFHEP00000002430	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Acetyl-CoA carboxylase alpha.	0.698
cad	acacb	ENSFHEP00000009038	ENSFHEP00000028758	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Acetyl-CoA carboxylase beta.	0.698
cad	cps1	ENSFHEP00000009038	ENSFHEP00000010650	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Carbamoyl-phosphate synthase 1, mitochondrial.	0.949
cad	mccc1	ENSFHEP00000009038	ENSFHEP00000002486	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Methylcrotonoyl-CoA carboxylase 1 (alpha).	0.633
cad	pcca	ENSFHEP00000009038	ENSFHEP00000010428	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	Propionyl-CoA carboxylase subunit alpha.	0.633
cps1	LOC105927771	ENSFHEP00000010650	ENSFHEP00000002430	Carbamoyl-phosphate synthase 1, mitochondrial.	Acetyl-CoA carboxylase alpha.	0.698
cps1	acacb	ENSFHEP00000010650	ENSFHEP00000028758	Carbamoyl-phosphate synthase 1, mitochondrial.	Acetyl-CoA carboxylase beta.	0.698
cps1	cad	ENSFHEP00000010650	ENSFHEP00000009038	Carbamoyl-phosphate synthase 1, mitochondrial.	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	0.949