(6 nodes) Rad60/SUMO-like domain network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sumo2	Small ubiquitin-related modifier. (95 aa)
	LOC105933585	Small ubiquitin-related modifier. (96 aa)
	nfatc2ip	Nuclear factor of activated T cells 2 interacting protein. (382 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)
	LOC105937167	Ubiquitin-like domain-containing protein. (133 aa)
	LOC105939042	Small ubiquitin like modifier 3. (158 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC105933585	LOC105939042	ENSFHEP00000023052	ENSFHEP00000008597	Small ubiquitin-related modifier.	Small ubiquitin like modifier 3.	0.900
LOC105933585	sumo1	ENSFHEP00000023052	ENSFHEP00000015878	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.828
LOC105933585	sumo2	ENSFHEP00000023052	ENSFHEP00000002112	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.900
LOC105937167	sumo1	ENSFHEP00000006742	ENSFHEP00000015878	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.827
LOC105939042	LOC105933585	ENSFHEP00000008597	ENSFHEP00000023052	Small ubiquitin like modifier 3.	Small ubiquitin-related modifier.	0.900
LOC105939042	sumo1	ENSFHEP00000008597	ENSFHEP00000015878	Small ubiquitin like modifier 3.	Small ubiquitin-related modifier.	0.827
LOC105939042	sumo2	ENSFHEP00000008597	ENSFHEP00000002112	Small ubiquitin like modifier 3.	Small ubiquitin-related modifier.	0.900
sumo1	LOC105933585	ENSFHEP00000015878	ENSFHEP00000023052	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.828
sumo1	LOC105937167	ENSFHEP00000015878	ENSFHEP00000006742	Small ubiquitin-related modifier.	Ubiquitin-like domain-containing protein.	0.827
sumo1	LOC105939042	ENSFHEP00000015878	ENSFHEP00000008597	Small ubiquitin-related modifier.	Small ubiquitin like modifier 3.	0.827
sumo1	sumo2	ENSFHEP00000015878	ENSFHEP00000002112	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.828
sumo2	LOC105933585	ENSFHEP00000002112	ENSFHEP00000023052	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.900
sumo2	LOC105939042	ENSFHEP00000002112	ENSFHEP00000008597	Small ubiquitin-related modifier.	Small ubiquitin like modifier 3.	0.900
sumo2	sumo1	ENSFHEP00000002112	ENSFHEP00000015878	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.828