(4 nodes) Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 network (Fundulus heteroclitus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (59 aa)
	ENSFHEP00000014705	Uncharacterized protein. (125 aa)
	ENSFHEP00000012172	Small nuclear ribonucleoprotein D1 polypeptide. (82 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000012172	ENSFHEP00000014705	ENSFHEP00000012172	ENSFHEP00000014705	Small nuclear ribonucleoprotein D1 polypeptide.	Uncharacterized protein.	0.988
ENSFHEP00000012172	LSM4	ENSFHEP00000012172	ENSFHEP00000014760	Small nuclear ribonucleoprotein D1 polypeptide.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.918
ENSFHEP00000012172	snrpd3	ENSFHEP00000012172	ENSFHEP00000009518	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSFHEP00000014705	ENSFHEP00000012172	ENSFHEP00000014705	ENSFHEP00000012172	Uncharacterized protein.	Small nuclear ribonucleoprotein D1 polypeptide.	0.988
ENSFHEP00000014705	snrpd3	ENSFHEP00000014705	ENSFHEP00000009518	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.992
LSM4	ENSFHEP00000012172	ENSFHEP00000014760	ENSFHEP00000012172	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein D1 polypeptide.	0.918
LSM4	snrpd3	ENSFHEP00000014760	ENSFHEP00000009518	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.985
snrpd3	ENSFHEP00000012172	ENSFHEP00000009518	ENSFHEP00000012172	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein D1 polypeptide.	0.999
snrpd3	ENSFHEP00000014705	ENSFHEP00000009518	ENSFHEP00000014705	Small nuclear ribonucleoprotein Sm D3.	Uncharacterized protein.	0.992
snrpd3	LSM4	ENSFHEP00000009518	ENSFHEP00000014760	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.985