STRINGSTRING
LOC105934097 LOC105934097 LOC105934609 LOC105934609 H2AZ1 H2AZ1 HIST1H4J HIST1H4J LOC105930101 LOC105930101 gtf2h1 gtf2h1 ercc6 ercc6 polr2f polr2f LOC105916199 LOC105916199 ENSFHEP00000005562 ENSFHEP00000005562 ENSFHEP00000005639 ENSFHEP00000005639 ENSFHEP00000005668 ENSFHEP00000005668 ENSFHEP00000005886 ENSFHEP00000005886 ENSFHEP00000006008 ENSFHEP00000006008 mnat1 mnat1 dmtf1 dmtf1 gcna gcna ENSFHEP00000008506 ENSFHEP00000008506 polr1e polr1e LOC105916185 LOC105916185 ENSFHEP00000008974 ENSFHEP00000008974 ENSFHEP00000009416 ENSFHEP00000009416 LOC105937143 LOC105937143 ENSFHEP00000009465 ENSFHEP00000009465 ENSFHEP00000009577 ENSFHEP00000009577 ENSFHEP00000009587 ENSFHEP00000009587 LOC105938962 LOC105938962 ENSFHEP00000011769 ENSFHEP00000011769 twistnb twistnb ENSFHEP00000012416 ENSFHEP00000012416 LOC105936597 LOC105936597 taf1b taf1b ENSFHEP00000015378 ENSFHEP00000015378 LOC105916185-2 LOC105916185-2 ENSFHEP00000015398 ENSFHEP00000015398 LOC105933186 LOC105933186 LOC105917477 LOC105917477 LOC105933185 LOC105933185 ENSFHEP00000017360 ENSFHEP00000017360 ENSFHEP00000017931 ENSFHEP00000017931 ENSFHEP00000018304 ENSFHEP00000018304 ENSFHEP00000018807 ENSFHEP00000018807 polr1b polr1b znrd1 znrd1 ENSFHEP00000020521 ENSFHEP00000020521 mta2 mta2 ENSFHEP00000020929 ENSFHEP00000020929 taf1a taf1a gtf2h5 gtf2h5 gtf2h3 gtf2h3 ercc2 ercc2 LOC105935774 LOC105935774 LOC105934592 LOC105934592 chd5 chd5 ENSFHEP00000022800 ENSFHEP00000022800 LOC105935706 LOC105935706 ercc3 ercc3 cdk7 cdk7 LOC105918908 LOC105918908 polr1a polr1a ENSFHEP00000024487 ENSFHEP00000024487 ENSFHEP00000024749 ENSFHEP00000024749 ubtf ubtf tbpl1 tbpl1 ccnh ccnh rrn3 rrn3 tbp tbp LOC105917667 LOC105917667 LOC105936024 LOC105936024 polr1c polr1c LOC105932783 LOC105932783 ENSFHEP00000028161 ENSFHEP00000028161 LOC105935710 LOC105935710 chd4 chd4 ENSFHEP00000028662 ENSFHEP00000028662 LOC105934310 LOC105934310 ENSFHEP00000030193 ENSFHEP00000030193 ENSFHEP00000030619 ENSFHEP00000030619 ENSFHEP00000031225 ENSFHEP00000031225 LOC105916199-2 LOC105916199-2 H3-3B H3-3B polr2h polr2h polr2l polr2l LOC105915693 LOC105915693 LOC110369136 LOC110369136 gatad2a gatad2a ENSFHEP00000034334 ENSFHEP00000034334 POLR2E POLR2E gtf2h4 gtf2h4 ENSFHEP00000034658 ENSFHEP00000034658 ENSFHEP00000034932 ENSFHEP00000034932 LOC105926705 LOC105926705 mta1 mta1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC105934097Chromodomain helicase DNA binding protein 4a. (1765 aa)
LOC105934609Uncharacterized protein. (246 aa)
H2AZ1Histone H2A; Belongs to the histone H2A family. (128 aa)
HIST1H4JHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
LOC105930101Histone H3; Belongs to the histone H3 family. (136 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
ercc6Excision repair cross-complementation group 6. (1336 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (162 aa)
LOC105916199Histone H2B; Belongs to the histone H2B family. (67 aa)
ENSFHEP00000005562Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (95 aa)
ENSFHEP00000005639Histone H2A; Belongs to the histone H2A family. (136 aa)
ENSFHEP00000005668BAH domain-containing protein. (89 aa)
ENSFHEP00000005886Histone H3; Belongs to the histone H3 family. (90 aa)
ENSFHEP00000006008Uncharacterized protein. (57 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
dmtf1Cyclin D binding myb-like transcription factor 1. (667 aa)
gcnaGerm cell nuclear acidic peptidase. (706 aa)
ENSFHEP00000008506Histone H2B; Belongs to the histone H2B family. (121 aa)
polr1eRNA polymerase I subunit E. (416 aa)
LOC105916185Histone H2B; Belongs to the histone H2B family. (124 aa)
ENSFHEP00000008974Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
ENSFHEP00000009416Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (94 aa)
LOC105937143Histone H2B; Belongs to the histone H2B family. (124 aa)
ENSFHEP00000009465Histone H2A; Belongs to the histone H2A family. (137 aa)
ENSFHEP00000009577Histone H2B; Belongs to the histone H2B family. (113 aa)
ENSFHEP00000009587Uncharacterized protein. (84 aa)
LOC105938962Methyl-CpG binding domain protein 3a. (276 aa)
ENSFHEP00000011769Histone H2A; Belongs to the histone H2A family. (139 aa)
twistnbTWIST neighbor. (360 aa)
ENSFHEP00000012416RPOLD domain-containing protein. (205 aa)
LOC105936597Methyl-CpG binding domain protein 2. (265 aa)
taf1bTATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (442 aa)
ENSFHEP00000015378Uncharacterized protein. (369 aa)
LOC105916185-2Histone H2B 1/2. (124 aa)
ENSFHEP00000015398PHD domain-containing protein. (74 aa)
LOC105933186Histone H3; Belongs to the histone H3 family. (136 aa)
LOC105917477Retinoblastoma binding protein 4. (483 aa)
LOC105933185Histone H3; Belongs to the histone H3 family. (137 aa)
ENSFHEP00000017360Uncharacterized protein. (162 aa)
ENSFHEP00000017931Uncharacterized protein. (59 aa)
ENSFHEP00000018304Histone H2B; Belongs to the histone H2B family. (59 aa)
ENSFHEP00000018807GATA zinc finger domain containing 2B. (639 aa)
polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1040 aa)
znrd1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
ENSFHEP00000020521Autoimmune regulator. (376 aa)
mta2Metastasis associated 1 family, member 2. (640 aa)
ENSFHEP00000020929General transcription factor IIH, polypeptide 2. (212 aa)
taf1aTATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (422 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (300 aa)
ercc2TFIIH basal transcription factor complex helicase XPD subunit. (795 aa)
LOC105935774Histone H2A; Belongs to the histone H2A family. (121 aa)
LOC105934592Uncharacterized protein. (745 aa)
chd5Uncharacterized protein. (1743 aa)
ENSFHEP00000022800Histone H2A; Belongs to the histone H2A family. (140 aa)
LOC105935706Caveolae associated protein 1b. (468 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
LOC105918908TATA box binding protein like 2. (326 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1605 aa)
ENSFHEP00000024487Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (104 aa)
ENSFHEP00000024749Histone H2A; Belongs to the histone H2A family. (130 aa)
ubtfUpstream binding transcription factor. (738 aa)
tbpl1TATA box-binding 1-like protein. (186 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
rrn3RRN3 homolog, RNA polymerase I transcription factor. (607 aa)
tbpTATA box binding protein. (308 aa)
LOC105917667Histone domain-containing protein. (139 aa)
LOC105936024Histone H2B; Belongs to the histone H2B family. (133 aa)
polr1cRNA polymerase I and III subunit C. (296 aa)
LOC105932783Polymerase I and transcript release factor. (421 aa)
ENSFHEP00000028161Histone H2A; Belongs to the histone H2A family. (136 aa)
LOC105935710Histone H2B; Belongs to the histone H2B family. (116 aa)
chd4Chromodomain helicase DNA binding protein 4b. (1756 aa)
ENSFHEP00000028662Histone H3; Belongs to the histone H3 family. (97 aa)
LOC105934310Chromobox homolog 3a (HP1 gamma homolog, Drosophila). (173 aa)
ENSFHEP00000030193Uncharacterized protein. (225 aa)
ENSFHEP00000030619HMG box domain-containing protein. (153 aa)
ENSFHEP00000031225CHDCT2 domain-containing protein. (284 aa)
LOC105916199-2Histone H2B.3. (67 aa)
H3-3BHistone H3.3. (136 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
LOC105915693CENP-T_C domain-containing protein. (87 aa)
LOC110369136Uncharacterized protein. (337 aa)
gatad2aGATA zinc finger domain containing 2Ab. (641 aa)
ENSFHEP00000034334HMG box domain-containing protein. (211 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (474 aa)
ENSFHEP00000034658Histone H2A; Belongs to the histone H2A family. (93 aa)
ENSFHEP00000034932Ssl1 domain-containing protein. (178 aa)
LOC105926705Histone H3.3. (136 aa)
mta1Metastasis associated 1. (704 aa)
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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