(8 nodes) Transport of fatty acids network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105927236	Prostaglandin D2 synthase b, tandem duplicate 1; Belongs to the calycin superfamily. Lipocalin family. (189 aa)
	slc27a1	Solute carrier family 27 member 1a. (758 aa)
	LOC105920050	Apolipoprotein Da, duplicate 1; Belongs to the calycin superfamily. Lipocalin family. (187 aa)
	slc27a4	Solute carrier family 27 member 4. (643 aa)
	LOC105923978	Zgc:153704; Belongs to the calycin superfamily. Lipocalin family. (191 aa)
	slc27a6	Long-chain fatty acid transport protein 6. (623 aa)
	LOC105935727	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (182 aa)
	LOC105935755	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (193 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC105923978	LOC105927236	ENSFHEP00000005202	ENSFHEP00000022929	Zgc:153704; Belongs to the calycin superfamily. Lipocalin family.	Prostaglandin D2 synthase b, tandem duplicate 1; Belongs to the calycin superfamily. Lipocalin family.	0.905
LOC105927236	LOC105923978	ENSFHEP00000022929	ENSFHEP00000005202	Prostaglandin D2 synthase b, tandem duplicate 1; Belongs to the calycin superfamily. Lipocalin family.	Zgc:153704; Belongs to the calycin superfamily. Lipocalin family.	0.905
slc27a1	slc27a4	ENSFHEP00000030175	ENSFHEP00000010150	Solute carrier family 27 member 1a.	Solute carrier family 27 member 4.	0.952
slc27a1	slc27a6	ENSFHEP00000030175	ENSFHEP00000003964	Solute carrier family 27 member 1a.	Long-chain fatty acid transport protein 6.	0.701
slc27a4	slc27a1	ENSFHEP00000010150	ENSFHEP00000030175	Solute carrier family 27 member 4.	Solute carrier family 27 member 1a.	0.952
slc27a4	slc27a6	ENSFHEP00000010150	ENSFHEP00000003964	Solute carrier family 27 member 4.	Long-chain fatty acid transport protein 6.	0.693
slc27a6	slc27a1	ENSFHEP00000003964	ENSFHEP00000030175	Long-chain fatty acid transport protein 6.	Solute carrier family 27 member 1a.	0.701
slc27a6	slc27a4	ENSFHEP00000003964	ENSFHEP00000010150	Long-chain fatty acid transport protein 6.	Solute carrier family 27 member 4.	0.693