11 items (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFHEP00000001663	Uncharacterized protein. (351 aa)
	ranbp9	RAN binding protein 9. (596 aa)
	kras	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	shc1	SHC (Src homology 2 domain containing) transforming protein 1. (486 aa)
	LOC105939921	Zgc:55558. (187 aa)
	SHC4	SHC adaptor protein 4. (392 aa)
	ranbp10	RAN binding protein 10. (572 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1372 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (870 aa)
	grb2	Growth factor receptor-bound protein 2b. (217 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSFHEP00000001663	ENSFHEP00000027279	ENSFHEP00000001663	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.416
CSDE1	SHC4	ENSFHEP00000027279	ENSFHEP00000022286	Cold shock domain containing E1, RNA-binding.	SHC adaptor protein 4.	0.507
CSDE1	grb2	ENSFHEP00000027279	ENSFHEP00000027392	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.759
CSDE1	met	ENSFHEP00000027279	ENSFHEP00000026901	Cold shock domain containing E1, RNA-binding.	MET proto-oncogene, receptor tyrosine kinase.	0.763
CSDE1	shc1	ENSFHEP00000027279	ENSFHEP00000018734	Cold shock domain containing E1, RNA-binding.	SHC (Src homology 2 domain containing) transforming protein 1.	0.507
ENSFHEP00000001663	CSDE1	ENSFHEP00000001663	ENSFHEP00000027279	Uncharacterized protein.	Cold shock domain containing E1, RNA-binding.	0.416
ENSFHEP00000001663	LOC105939921	ENSFHEP00000001663	ENSFHEP00000018953	Uncharacterized protein.	Zgc:55558.	0.416
ENSFHEP00000001663	grb2	ENSFHEP00000001663	ENSFHEP00000027392	Uncharacterized protein.	Growth factor receptor-bound protein 2b.	0.613
ENSFHEP00000001663	hras	ENSFHEP00000001663	ENSFHEP00000026925	Uncharacterized protein.	HRas proto-oncogene, GTPase a.	0.416
ENSFHEP00000001663	kras	ENSFHEP00000001663	ENSFHEP00000007955	Uncharacterized protein.	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	0.416
ENSFHEP00000001663	met	ENSFHEP00000001663	ENSFHEP00000026901	Uncharacterized protein.	MET proto-oncogene, receptor tyrosine kinase.	0.960
LOC105939921	ENSFHEP00000001663	ENSFHEP00000018953	ENSFHEP00000001663	Zgc:55558.	Uncharacterized protein.	0.416
LOC105939921	SHC4	ENSFHEP00000018953	ENSFHEP00000022286	Zgc:55558.	SHC adaptor protein 4.	0.507
LOC105939921	grb2	ENSFHEP00000018953	ENSFHEP00000027392	Zgc:55558.	Growth factor receptor-bound protein 2b.	0.759
LOC105939921	hras	ENSFHEP00000018953	ENSFHEP00000026925	Zgc:55558.	HRas proto-oncogene, GTPase a.	0.900
LOC105939921	kras	ENSFHEP00000018953	ENSFHEP00000007955	Zgc:55558.	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	0.947
LOC105939921	met	ENSFHEP00000018953	ENSFHEP00000026901	Zgc:55558.	MET proto-oncogene, receptor tyrosine kinase.	0.767
LOC105939921	shc1	ENSFHEP00000018953	ENSFHEP00000018734	Zgc:55558.	SHC (Src homology 2 domain containing) transforming protein 1.	0.507
SHC4	CSDE1	ENSFHEP00000022286	ENSFHEP00000027279	SHC adaptor protein 4.	Cold shock domain containing E1, RNA-binding.	0.507
SHC4	LOC105939921	ENSFHEP00000022286	ENSFHEP00000018953	SHC adaptor protein 4.	Zgc:55558.	0.507