40 items (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFHEP00000007034	LAM_G_DOMAIN domain-containing protein. (246 aa)
	dock7	Dedicator of cytokinesis 7; Belongs to the DOCK family. (2107 aa)
	ENSFHEP00000001273	Laminin N-terminal domain-containing protein. (304 aa)
	lamc3	Laminin, gamma 3. (1168 aa)
	ENSFHEP00000001663	Uncharacterized protein. (351 aa)
	ENSFHEP00000006232	Uncharacterized protein. (509 aa)
	gab1	GRB2-associated binding protein 1. (872 aa)
	LOC105930007	Rap guanine nucleotide exchange factor (GEF) 1b. (1097 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (302 aa)
	lamb3	Uncharacterized protein. (1124 aa)
	SRC	Tyrosine-protein kinase. (548 aa)
	LOC105937872	Laminin, beta 2 (laminin S). (1803 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1238 aa)
	LOC105918704	Ras-related protein Rap-1A. (184 aa)
	LOC105918234	Tyrosine-protein kinase. (550 aa)
	TNS3	Tensin 3. (1224 aa)
	ENSFHEP00000014141	Laminin N-terminal domain-containing protein. (251 aa)
	ENSFHEP00000014164	Uncharacterized protein. (1116 aa)
	ENSFHEP00000014594	Uncharacterized protein. (535 aa)
	ENSFHEP00000015743	Tensin 1. (1075 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1207 aa)
	lamb1	Laminin, beta 1a. (1758 aa)
	ENSFHEP00000018978	Fibrillar collagen NC1 domain-containing protein. (1077 aa)
	LOC105922845	Uncharacterized protein. (892 aa)
	LOC105926780	Uncharacterized protein. (340 aa)
	CRK	CRK proto-oncogene, adaptor protein. (319 aa)
	ENSFHEP00000021668	Fibrillar collagen NC1 domain-containing protein. (118 aa)
	tns4	SH2 domain-containing protein. (621 aa)
	LOC105935262	RAP1A, member of RAS oncogene family a. (185 aa)
	ENSFHEP00000025740	Fibrillar collagen NC1 domain-containing protein. (112 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1372 aa)
	grb2	Growth factor receptor-bound protein 2b. (217 aa)
	lama4	Laminin, alpha 4. (1874 aa)
	lamc1	Laminin, gamma 1. (1014 aa)
	ENSFHEP00000027483	Uncharacterized protein. (146 aa)
	tns1	Tensin 1b. (1783 aa)
	ENSFHEP00000030467	Laminin, alpha 5. (1622 aa)
	ENSFHEP00000030650	Uncharacterized protein. (1028 aa)
	LOC105935996	Uncharacterized protein. (185 aa)
	ENSFHEP00000033800	PH domain-containing protein. (365 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRK	ENSFHEP00000033800	ENSFHEP00000020489	ENSFHEP00000033800	CRK proto-oncogene, adaptor protein.	PH domain-containing protein.	0.806
CRK	LOC105918234	ENSFHEP00000020489	ENSFHEP00000012505	CRK proto-oncogene, adaptor protein.	Tyrosine-protein kinase.	0.625
CRK	LOC105918704	ENSFHEP00000020489	ENSFHEP00000012353	CRK proto-oncogene, adaptor protein.	Ras-related protein Rap-1A.	0.602
CRK	LOC105926780	ENSFHEP00000020489	ENSFHEP00000020305	CRK proto-oncogene, adaptor protein.	Uncharacterized protein.	0.954
CRK	LOC105930007	ENSFHEP00000020489	ENSFHEP00000007398	CRK proto-oncogene, adaptor protein.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.992
CRK	LOC105935262	ENSFHEP00000020489	ENSFHEP00000024043	CRK proto-oncogene, adaptor protein.	RAP1A, member of RAS oncogene family a.	0.602
CRK	LOC105935996	ENSFHEP00000020489	ENSFHEP00000030994	CRK proto-oncogene, adaptor protein.	Uncharacterized protein.	0.602
CRK	SRC	ENSFHEP00000020489	ENSFHEP00000011333	CRK proto-oncogene, adaptor protein.	Tyrosine-protein kinase.	0.625
CRK	crkl	ENSFHEP00000020489	ENSFHEP00000010007	CRK proto-oncogene, adaptor protein.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.953
CRK	dock7	ENSFHEP00000020489	ENSFHEP00000000698	CRK proto-oncogene, adaptor protein.	Dedicator of cytokinesis 7; Belongs to the DOCK family.	0.512
CRK	gab1	ENSFHEP00000020489	ENSFHEP00000006359	CRK proto-oncogene, adaptor protein.	GRB2-associated binding protein 1.	0.806
CRK	grb2	ENSFHEP00000020489	ENSFHEP00000027392	CRK proto-oncogene, adaptor protein.	Growth factor receptor-bound protein 2b.	0.869
CRK	met	ENSFHEP00000020489	ENSFHEP00000026901	CRK proto-oncogene, adaptor protein.	MET proto-oncogene, receptor tyrosine kinase.	0.848
ENSFHEP00000001273	ENSFHEP00000006232	ENSFHEP00000001273	ENSFHEP00000006232	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.616
ENSFHEP00000001273	ENSFHEP00000014141	ENSFHEP00000001273	ENSFHEP00000014141	Laminin N-terminal domain-containing protein.	Laminin N-terminal domain-containing protein.	0.471
ENSFHEP00000001273	ENSFHEP00000014164	ENSFHEP00000001273	ENSFHEP00000014164	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.776
ENSFHEP00000001273	ENSFHEP00000014594	ENSFHEP00000001273	ENSFHEP00000014594	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.776
ENSFHEP00000001273	ENSFHEP00000027483	ENSFHEP00000001273	ENSFHEP00000027483	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.943
ENSFHEP00000001273	ENSFHEP00000030467	ENSFHEP00000001273	ENSFHEP00000030467	Laminin N-terminal domain-containing protein.	Laminin, alpha 5.	0.776
ENSFHEP00000001273	ENSFHEP00000030650	ENSFHEP00000001273	ENSFHEP00000030650	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.776