108 items (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPL5-2	Ribosomal protein L5. (299 aa)
	RPL3L	Ribosomal protein L3 like. (329 aa)
	rpl18	Ribosomal protein L18. (190 aa)
	rps3	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (245 aa)
	rps16	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	LOC105928521	40S ribosomal protein S27. (133 aa)
	ENSFHEP00000033608	Uncharacterized protein. (77 aa)
	rpl31	Ribosomal protein L31. (124 aa)
	rps13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (108 aa)
	RPL30	Ribosomal protein L30. (95 aa)
	rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (170 aa)
	RPS20	Ribosomal protein S20. (119 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (147 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rps12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (211 aa)
	RPS29	Ribosomal protein S29. (66 aa)
	ENSFHEP00000032075	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	rpl39	Ribosomal protein L39. (51 aa)
	rpl14	Ribosomal protein L14. (137 aa)
	rps10	Ribosomal protein S10. (166 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	UPF1	UPF1 RNA helicase and ATPase. (991 aa)
	LOC105938893	ADP-ribosylation factor-like 6 interacting protein 1. (203 aa)
	rps21	Ribosomal protein S21. (137 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	rpl11	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
	LOC105916387	40S ribosomal S17-like protein. (134 aa)
	rpl24	Ribosomal protein L24. (157 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	LOC105935138	40S ribosomal protein S27. (95 aa)
	rpl7l1	Ribosomal protein L7-like 1. (251 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (227 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	ENSFHEP00000025750	Ribosomal_L18e/L15P domain-containing protein. (69 aa)
	rps18	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	LOC105931547	Ribosomal protein L26. (180 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	RSRC1	Arginine and serine rich coiled-coil 1. (331 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	rps15	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
	rpl4	Ribosomal protein L4. (368 aa)
	LOC105936825	40S ribosomal protein S27. (138 aa)
	LOC105937277	NAD(P)-bd_dom domain-containing protein. (216 aa)
	rplp0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
	LOC105927090	Poly(A) binding protein, cytoplasmic 1-like. (644 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
	rpl32	Ribosomal protein L32. (93 aa)
	rpl35	Ribosomal protein L35. (123 aa)
	rpl34	Ribosomal protein L34. (117 aa)
	rps24	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (139 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	rps4x	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	rpl23	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (126 aa)
	pabpc1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
	LOC105916325	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	rpl37a	Ribosomal protein L37a. (92 aa)
	rps17	Uncharacterized protein. (135 aa)
	rpl7	Ribosomal protein L7. (174 aa)
	LOC105928015	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	LOC105921030	Uncharacterized protein. (130 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
	ENSFHEP00000015303	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (110 aa)
	rps9	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	rps15a	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (153 aa)
	RPL19-2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	rps25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (123 aa)
	rsad1	Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (439 aa)
	LOC105923102	Uncharacterized protein. (214 aa)
	LOC105921137	Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family. (149 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (796 aa)
	rnpepl1	Arginyl aminopeptidase like 1. (556 aa)
	LOC105918681	Ribosomal_L18e/L15P domain-containing protein. (135 aa)
	rps19	Ribosomal protein S19. (146 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	RPL5	Ribosomal protein L5b. (292 aa)
	ENSFHEP00000009411	Uncharacterized protein. (139 aa)
	rpsa	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (307 aa)
	rpl8	Ribosomal protein L8. (257 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	LOC105937971	G1 to S phase transition 1, like. (561 aa)
	rpl6	Ribosomal protein L6. (259 aa)
	rpl38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rpl9	Ribosomal protein L9. (193 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	LOC105935109	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (634 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (120 aa)
	rpl28	Ribosomal protein L28. (169 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (92 aa)
	pabpc4	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (626 aa)
	rps8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	rpl22l1	Ribosomal protein L22-like 1. (131 aa)
	rpl3	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (378 aa)
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (113 aa)
	LOC105933890	Uncharacterized protein. (1110 aa)
	rps28	Ribosomal protein S28. (69 aa)
	ENSFHEP00000004789	Ribosomal_S17_N domain-containing protein. (75 aa)
	rpl13a	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
	rps14	Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (167 aa)
	LOC105939229	Ribosomal protein L22. (130 aa)
	ncbp2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
	RPL7A	Ribosomal protein L7a. (266 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (235 aa)
	etf1	Eukaryotic peptide chain release factor subunit 1. (443 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000004789	ENSFHEP00000009411	ENSFHEP00000004789	ENSFHEP00000009411	Ribosomal_S17_N domain-containing protein.	Uncharacterized protein.	0.999
ENSFHEP00000004789	ENSFHEP00000015303	ENSFHEP00000004789	ENSFHEP00000015303	Ribosomal_S17_N domain-containing protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.998
ENSFHEP00000004789	ENSFHEP00000025750	ENSFHEP00000004789	ENSFHEP00000025750	Ribosomal_S17_N domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.996
ENSFHEP00000004789	ENSFHEP00000032075	ENSFHEP00000004789	ENSFHEP00000032075	Ribosomal_S17_N domain-containing protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.995
ENSFHEP00000004789	ENSFHEP00000033608	ENSFHEP00000004789	ENSFHEP00000033608	Ribosomal_S17_N domain-containing protein.	Uncharacterized protein.	0.997
ENSFHEP00000004789	LOC105916325	ENSFHEP00000004789	ENSFHEP00000017213	Ribosomal_S17_N domain-containing protein.	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.995
ENSFHEP00000004789	LOC105916387	ENSFHEP00000004789	ENSFHEP00000029886	Ribosomal_S17_N domain-containing protein.	40S ribosomal S17-like protein.	0.999
ENSFHEP00000004789	LOC105918681	ENSFHEP00000004789	ENSFHEP00000010688	Ribosomal_S17_N domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.997
ENSFHEP00000004789	LOC105921030	ENSFHEP00000004789	ENSFHEP00000015729	Ribosomal_S17_N domain-containing protein.	Uncharacterized protein.	0.980
ENSFHEP00000004789	LOC105921137	ENSFHEP00000004789	ENSFHEP00000012473	Ribosomal_S17_N domain-containing protein.	Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
ENSFHEP00000004789	LOC105923102	ENSFHEP00000004789	ENSFHEP00000012569	Ribosomal_S17_N domain-containing protein.	Uncharacterized protein.	0.996
ENSFHEP00000004789	LOC105927090	ENSFHEP00000004789	ENSFHEP00000022798	Ribosomal_S17_N domain-containing protein.	Poly(A) binding protein, cytoplasmic 1-like.	0.618
ENSFHEP00000004789	LOC105928015	ENSFHEP00000004789	ENSFHEP00000015946	Ribosomal_S17_N domain-containing protein.	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.995
ENSFHEP00000004789	LOC105928521	ENSFHEP00000004789	ENSFHEP00000033815	Ribosomal_S17_N domain-containing protein.	40S ribosomal protein S27.	0.998
ENSFHEP00000004789	LOC105931547	ENSFHEP00000004789	ENSFHEP00000025276	Ribosomal_S17_N domain-containing protein.	Ribosomal protein L26.	0.999
ENSFHEP00000004789	LOC105933890	ENSFHEP00000004789	ENSFHEP00000005383	Ribosomal_S17_N domain-containing protein.	Uncharacterized protein.	0.612
ENSFHEP00000004789	LOC105935109	ENSFHEP00000004789	ENSFHEP00000007110	Ribosomal_S17_N domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.618
ENSFHEP00000004789	LOC105935138	ENSFHEP00000004789	ENSFHEP00000028123	Ribosomal_S17_N domain-containing protein.	40S ribosomal protein S27.	0.999
ENSFHEP00000004789	LOC105936825	ENSFHEP00000004789	ENSFHEP00000023336	Ribosomal_S17_N domain-containing protein.	40S ribosomal protein S27.	0.995
ENSFHEP00000004789	LOC105937277	ENSFHEP00000004789	ENSFHEP00000023167	Ribosomal_S17_N domain-containing protein.	NAD(P)-bd_dom domain-containing protein.	0.996