STRINGSTRING
smc3 smc3 LOC105933186 LOC105933186 LOC105933185 LOC105933185 ctcf ctcf ENSFHEP00000028662 ENSFHEP00000028662 ENSFHEP00000028777 ENSFHEP00000028777 irx6 irx6 LOC105930101 LOC105930101 OLA1 OLA1 irx3 irx3 irx5 irx5 ENSFHEP00000005886 ENSFHEP00000005886 LOC105939046 LOC105939046 ENSFHEP00000009414 ENSFHEP00000009414
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
smc3Structural maintenance of chromosomes 3. (1155 aa)
LOC105933186Histone H3; Belongs to the histone H3 family. (136 aa)
LOC105933185Histone H3; Belongs to the histone H3 family. (137 aa)
ctcfCCCTC-binding factor (zinc finger protein). (755 aa)
ENSFHEP00000028662Histone H3; Belongs to the histone H3 family. (97 aa)
ENSFHEP00000028777Histone H3; Belongs to the histone H3 family. (122 aa)
irx6Iroquois homeobox 6a. (484 aa)
LOC105930101Histone H3; Belongs to the histone H3 family. (136 aa)
OLA1Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. (398 aa)
irx3Iroquois homeobox 3a. (431 aa)
irx5Iroquois homeobox 5a. (466 aa)
ENSFHEP00000005886Histone H3; Belongs to the histone H3 family. (90 aa)
LOC105939046Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. (395 aa)
ENSFHEP00000009414Histone H3; Belongs to the histone H3 family. (120 aa)
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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