(34 nodes) Rho (Ras homology) subfamily of Ras-like small GTPases network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFHEP00000008410	Ras homolog gene family, member Gd. (149 aa)
	rac2	Rac family small GTPase 2. (192 aa)
	ENSFHEP00000007306	Ras homolog family member H. (195 aa)
	LOC105935604	Uncharacterized protein. (289 aa)
	LOC105920975	Uncharacterized protein. (200 aa)
	LOC105928568	Cell division control protein 42. (191 aa)
	LOC105927124	Uncharacterized protein. (193 aa)
	LOC105935716	Rac family small GTPase 3b. (192 aa)
	LOC105934100	Cell division control protein 42. (191 aa)
	LOC105930058	Ras-related C3 botulinum toxin substrate 1. (192 aa)
	LOC105928994	Rho-related GTP-binding protein Rho6. (232 aa)
	LOC105935878	Uncharacterized protein. (202 aa)
	LOC105937638	Ras homolog family member V. (236 aa)
	CDC42	Cell division control protein 42. (191 aa)
	rhobtb2	Rho related BTB domain containing 2a. (692 aa)
	rnd3	Rho family GTPase 3a. (243 aa)
	LOC105921785	Ras homolog family member Gb. (191 aa)
	rhof	Ras homolog family member F. (210 aa)
	LOC105925454	Rho related BTB domain containing 4. (734 aa)
	LOC105935606	Uncharacterized protein. (193 aa)
	LOC105931195	Uncharacterized protein. (272 aa)
	RHOB	Ras homolog family member B. (113 aa)
	rhoq	Ras homolog family member Q. (207 aa)
	LOC105929125	Transforming protein RhoA. (193 aa)
	LOC105928052	Ras homolog family member Ca. (196 aa)
	RND1	Rho family GTPase 1. (232 aa)
	LOC105936559	Rho-related GTP-binding protein RhoU. (243 aa)
	ENSFHEP00000012362	Uncharacterized protein. (226 aa)
	LOC105932714	Rho family GTPase 2. (235 aa)
	LOC105931589	Uncharacterized protein. (191 aa)
	LOC105931543	Uncharacterized protein. (191 aa)
	rhou	Uncharacterized protein. (268 aa)
	LOC105924057	Uncharacterized protein. (191 aa)
	LOC105919671	Rho-related GTP-binding protein RhoN. (230 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSFHEP00000007306	ENSFHEP00000032957	ENSFHEP00000007306	Cell division control protein 42.	Ras homolog family member H.	0.555
CDC42	ENSFHEP00000008410	ENSFHEP00000032957	ENSFHEP00000008410	Cell division control protein 42.	Ras homolog gene family, member Gd.	0.600
CDC42	LOC105920975	ENSFHEP00000032957	ENSFHEP00000004487	Cell division control protein 42.	Uncharacterized protein.	0.653
CDC42	LOC105921785	ENSFHEP00000032957	ENSFHEP00000029005	Cell division control protein 42.	Ras homolog family member Gb.	0.596
CDC42	LOC105924057	ENSFHEP00000032957	ENSFHEP00000008496	Cell division control protein 42.	Uncharacterized protein.	0.599
CDC42	LOC105927124	ENSFHEP00000032957	ENSFHEP00000003499	Cell division control protein 42.	Uncharacterized protein.	0.652
CDC42	LOC105928052	ENSFHEP00000032957	ENSFHEP00000016210	Cell division control protein 42.	Ras homolog family member Ca.	0.654
CDC42	LOC105928994	ENSFHEP00000032957	ENSFHEP00000034912	Cell division control protein 42.	Rho-related GTP-binding protein Rho6.	0.491
CDC42	LOC105929125	ENSFHEP00000032957	ENSFHEP00000016214	Cell division control protein 42.	Transforming protein RhoA.	0.653
CDC42	LOC105930058	ENSFHEP00000032957	ENSFHEP00000012956	Cell division control protein 42.	Ras-related C3 botulinum toxin substrate 1.	0.684
CDC42	LOC105931543	ENSFHEP00000032957	ENSFHEP00000011007	Cell division control protein 42.	Uncharacterized protein.	0.892
CDC42	LOC105931589	ENSFHEP00000032957	ENSFHEP00000011025	Cell division control protein 42.	Uncharacterized protein.	0.897
CDC42	LOC105934100	ENSFHEP00000032957	ENSFHEP00000001271	Cell division control protein 42.	Cell division control protein 42.	0.897
CDC42	LOC105935604	ENSFHEP00000032957	ENSFHEP00000005619	Cell division control protein 42.	Uncharacterized protein.	0.685
CDC42	LOC105935606	ENSFHEP00000032957	ENSFHEP00000024769	Cell division control protein 42.	Uncharacterized protein.	0.684
CDC42	LOC105935716	ENSFHEP00000032957	ENSFHEP00000003144	Cell division control protein 42.	Rac family small GTPase 3b.	0.684
CDC42	LOC105935878	ENSFHEP00000032957	ENSFHEP00000033759	Cell division control protein 42.	Uncharacterized protein.	0.655
CDC42	LOC105936559	ENSFHEP00000032957	ENSFHEP00000014903	Cell division control protein 42.	Rho-related GTP-binding protein RhoU.	0.561
CDC42	LOC105937638	ENSFHEP00000032957	ENSFHEP00000033380	Cell division control protein 42.	Ras homolog family member V.	0.567
CDC42	RHOB	ENSFHEP00000032957	ENSFHEP00000019704	Cell division control protein 42.	Ras homolog family member B.	0.654