(12 nodes) Zinc finger binding to DNA consensus sequence [AT]GATA[AG] network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105920540	Uncharacterized protein. (271 aa)
	gata6	Transcription factor GATA-4. (491 aa)
	rere	Arginine-glutamic acid dipeptide (RE) repeats a. (1268 aa)
	mta2	Metastasis associated 1 family, member 2. (640 aa)
	LOC105936611	GATA binding protein 5. (372 aa)
	gata3	Trans-acting T-cell-specific transcription factor GATA-3. (441 aa)
	trps1	Trichorhinophalangeal syndrome I. (1397 aa)
	GATA2	Endothelial transcription factor GATA-2. (460 aa)
	LOC105926046	Endothelial transcription factor GATA-2. (462 aa)
	LOC105919611	GATA binding protein 1a. (424 aa)
	mta1	Metastasis associated 1. (704 aa)
	gata4	GATA binding protein 4. (395 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GATA2	LOC105919611	ENSFHEP00000006111	ENSFHEP00000001731	Endothelial transcription factor GATA-2.	GATA binding protein 1a.	0.541
GATA2	LOC105920540	ENSFHEP00000006111	ENSFHEP00000028444	Endothelial transcription factor GATA-2.	Uncharacterized protein.	0.539
GATA2	LOC105936611	ENSFHEP00000006111	ENSFHEP00000012813	Endothelial transcription factor GATA-2.	GATA binding protein 5.	0.508
GATA2	gata4	ENSFHEP00000006111	ENSFHEP00000000502	Endothelial transcription factor GATA-2.	GATA binding protein 4.	0.492
GATA2	gata6	ENSFHEP00000006111	ENSFHEP00000025984	Endothelial transcription factor GATA-2.	Transcription factor GATA-4.	0.492
LOC105919611	GATA2	ENSFHEP00000001731	ENSFHEP00000006111	GATA binding protein 1a.	Endothelial transcription factor GATA-2.	0.541
LOC105919611	LOC105926046	ENSFHEP00000001731	ENSFHEP00000004585	GATA binding protein 1a.	Endothelial transcription factor GATA-2.	0.544
LOC105919611	gata3	ENSFHEP00000001731	ENSFHEP00000007630	GATA binding protein 1a.	Trans-acting T-cell-specific transcription factor GATA-3.	0.536
LOC105919611	trps1	ENSFHEP00000001731	ENSFHEP00000007565	GATA binding protein 1a.	Trichorhinophalangeal syndrome I.	0.410
LOC105920540	GATA2	ENSFHEP00000028444	ENSFHEP00000006111	Uncharacterized protein.	Endothelial transcription factor GATA-2.	0.539
LOC105920540	LOC105926046	ENSFHEP00000028444	ENSFHEP00000004585	Uncharacterized protein.	Endothelial transcription factor GATA-2.	0.540
LOC105920540	gata3	ENSFHEP00000028444	ENSFHEP00000007630	Uncharacterized protein.	Trans-acting T-cell-specific transcription factor GATA-3.	0.542
LOC105920540	trps1	ENSFHEP00000028444	ENSFHEP00000007565	Uncharacterized protein.	Trichorhinophalangeal syndrome I.	0.410
LOC105926046	LOC105919611	ENSFHEP00000004585	ENSFHEP00000001731	Endothelial transcription factor GATA-2.	GATA binding protein 1a.	0.544
LOC105926046	LOC105920540	ENSFHEP00000004585	ENSFHEP00000028444	Endothelial transcription factor GATA-2.	Uncharacterized protein.	0.540
LOC105926046	LOC105936611	ENSFHEP00000004585	ENSFHEP00000012813	Endothelial transcription factor GATA-2.	GATA binding protein 5.	0.508
LOC105926046	gata4	ENSFHEP00000004585	ENSFHEP00000000502	Endothelial transcription factor GATA-2.	GATA binding protein 4.	0.492
LOC105926046	gata6	ENSFHEP00000004585	ENSFHEP00000025984	Endothelial transcription factor GATA-2.	Transcription factor GATA-4.	0.513
LOC105936611	GATA2	ENSFHEP00000012813	ENSFHEP00000006111	GATA binding protein 5.	Endothelial transcription factor GATA-2.	0.508
LOC105936611	LOC105926046	ENSFHEP00000012813	ENSFHEP00000004585	GATA binding protein 5.	Endothelial transcription factor GATA-2.	0.508