STRINGSTRING
ccnh ccnh gtf2b gtf2b gtf2e2 gtf2e2 LOC103470674 LOC103470674 gtf2h1 gtf2h1 gtf2e1 gtf2e1 mnat1 mnat1 ercc2 ercc2 gtf2h4 gtf2h4 gtf2h3 gtf2h3 ercc3 ercc3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
gtf2bGeneral transcription factor IIB. (318 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
LOC103470674General transcription factor IIH subunit. (420 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
gtf2e1General transcription factor IIE, polypeptide 1, alpha. (462 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
ercc2Excision repair cross-complementation group 2. (655 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (434 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (277 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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