STRINGSTRING
tma16 tma16 exosc1 exosc1 pdcd11 pdcd11 c1d c1d pno1 pno1 LOC103466821 LOC103466821 rbm19 rbm19 rtca rtca noc3l noc3l bud23 bud23 tep1 tep1 nmd3 nmd3 exosc9 exosc9 riok2 riok2 skiv2l skiv2l utp23 utp23 bms1 bms1 ddx31 ddx31 gnl3 gnl3 dimt1 dimt1 mtrex mtrex rrp9 rrp9 bysl bysl esf1 esf1 nol10 nol10 nol6 nol6 wdr43 wdr43 ttc37 ttc37 utp25 utp25 utp3 utp3 ENSPREP00000008270 ENSPREP00000008270 gnl2 gnl2 lsg1 lsg1 utp11 utp11 ENSPREP00000008920 ENSPREP00000008920 mrto4 mrto4 LOC103468877 LOC103468877 ENSPREP00000009317 ENSPREP00000009317 gcc1 gcc1 imp3 imp3 noc4l noc4l LOC103475392 LOC103475392 Wdr74 Wdr74 nob1 nob1 nvl nvl glmn glmn grwd1 grwd1 rcl1 rcl1 ENSPREP00000011824 ENSPREP00000011824 dis3l dis3l nsun6 nsun6 nifk nifk nop53 nop53 nom1 nom1 Ddx18 Ddx18 exosc4 exosc4 retreg2 retreg2 tsr1 tsr1 utp15 utp15 emg1 emg1 nop2 nop2 dis3 dis3 LOC103482313 LOC103482313 ddx49 ddx49 ENSPREP00000016825 ENSPREP00000016825 exosc3 exosc3 dhx37 dhx37 exosc8 exosc8 LOC103476760 LOC103476760 pwp1 pwp1 tgs1 tgs1 nip7 nip7 cebpz cebpz utp18 utp18 pa2g4 pa2g4 aamp aamp LOC103463292 LOC103463292 ipo8 ipo8 gnl1 gnl1 wdr61 wdr61 tsr2 tsr2 abt1 abt1 utp6 utp6 utp20 utp20 dnttip2 dnttip2 aatf aatf krr1 krr1 helz2 helz2 imp4 imp4 wdr12 wdr12 ENSPREP00000020870 ENSPREP00000020870 nop58 nop58 rbm28 rbm28 exosc2 exosc2 ddx54 ddx54 Rrp15 Rrp15 ddx24 ddx24 rpf1 rpf1 kri1 kri1 rsl24d1 rsl24d1 ftsj3 ftsj3 ddx56 ddx56 nle1 nle1 noc2l noc2l LOC103482453 LOC103482453 bop1 bop1 cep152 cep152 ddx47 ddx47 Ddx27 Ddx27 LOC103461154 LOC103461154 LOC103482370 LOC103482370 LOC103473717 LOC103473717 dcaf13 dcaf13 nat10 nat10 Heatr1 Heatr1 ENSPREP00000024047 ENSPREP00000024047 exosc10 exosc10 rrp7a rrp7a rsl1d1 rsl1d1 ddx55 ddx55 wdr46 wdr46 ddx52 ddx52 mphosph6 mphosph6 nop14 nop14 ZFC3H1 ZFC3H1 gpatch4 gpatch4 wdr36 wdr36 mak16 mak16 brix1 brix1 dnajc21 dnajc21 exosc5 exosc5 pak1ip1 pak1ip1 ENSPREP00000026599 ENSPREP00000026599 fbl fbl LOC103467472 LOC103467472 LOC103470843 LOC103470843 utp4 utp4 fcf1 fcf1 sdad1 sdad1 ENSPREP00000028727 ENSPREP00000028727 Wdr3 Wdr3 pum3 pum3 exosc6 exosc6 ddx10 ddx10 LOC103467913 LOC103467913 lyar lyar gtpbp4 gtpbp4 rrs1 rrs1 snu13 snu13 znf593 znf593 rpf2 rpf2 retreg1 retreg1 znf622 znf622 LOC103467366 LOC103467366 rrp12 rrp12 ltv1 ltv1 nsa2 nsa2 nop56 nop56 ebna1bp2 ebna1bp2 zcchc8 zcchc8 eif6 eif6 surf6 surf6 gnl3l gnl3l nop9 nop9 pes1 pes1 mphosph10 mphosph10 rrp36 rrp36 ipo7 ipo7 ENSPREP00000034242 ENSPREP00000034242 rbm34 rbm34
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tma16Translation machinery associated 16 homolog. (226 aa)
exosc1Exosome component 1. (179 aa)
pdcd11Programmed cell death 11. (1810 aa)
c1dC1D nuclear receptor corepressor. (154 aa)
pno1Partner of NOB1 homolog. (252 aa)
LOC103466821Zona pellucida glycoprotein d. (394 aa)
rbm19RNA binding motif protein 19. (921 aa)
rtcaRNA 3'-terminal phosphate cyclase. (366 aa)
noc3lNOC3-like DNA replication regulator. (1039 aa)
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (391 aa)
tep1Uncharacterized protein. (2622 aa)
nmd360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (517 aa)
exosc9Exosome component 9. (461 aa)
riok2RIO kinase 2 (yeast). (520 aa)
skiv2lSKI2 homolog, superkiller viralicidic activity 2-like. (1180 aa)
utp23UTP23 small subunit processome component. (255 aa)
bms1BMS1 ribosome biogenesis factor. (1311 aa)
ddx31RNA helicase. (912 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (521 aa)
dimt1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (338 aa)
mtrexMtr4 exosome RNA helicase. (1053 aa)
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (483 aa)
byslBystin-like. (442 aa)
esf1ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae). (770 aa)
nol10Nucleolar protein 10. (718 aa)
nol6Nucleolar protein 6. (1145 aa)
wdr43WD repeat domain 43. (651 aa)
ttc37Tetratricopeptide repeat domain 37. (1569 aa)
utp25UTP25 small subunit processor component. (748 aa)
utp3UTP3 small subunit processome component. (472 aa)
ENSPREP00000008270WD_REPEATS_REGION domain-containing protein. (129 aa)
gnl2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (740 aa)
lsg1Large 60S subunit nuclear export GTPase 1. (613 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (252 aa)
ENSPREP00000008920Uncharacterized protein. (97 aa)
mrto4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (237 aa)
LOC103468877Peter pan homolog. (532 aa)
ENSPREP00000009317Purinergic receptor P2Y11; Belongs to the G-protein coupled receptor 1 family. (310 aa)
gcc1GRIP and coiled-coil domain containing 1. (757 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
noc4lNucleolar complex associated 4 homolog. (526 aa)
LOC103475392RNA binding motif protein 14a. (534 aa)
Wdr74WD repeat domain 74. (306 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (457 aa)
nvlNuclear VCP like; Belongs to the AAA ATPase family. (670 aa)
glmnGlomulin, FKBP associated protein a. (611 aa)
grwd1Glutamate-rich WD repeat containing 1. (448 aa)
rcl1RNA terminal phosphate cyclase-like 1. (372 aa)
ENSPREP00000011824Uncharacterized protein. (231 aa)
dis3lDIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (974 aa)
nsun6NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (457 aa)
nifkNucleolar protein interacting with the FHA domain of MKI67. (268 aa)
nop53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (431 aa)
nom1Nucleolar protein with MIF4G domain 1. (830 aa)
Ddx18DEAD (Asp-Glu-Ala-Asp) box polypeptide 18; Belongs to the DEAD box helicase family. (310 aa)
exosc4Exosome component 4. (245 aa)
retreg2Reticulophagy regulator family member 2. (561 aa)
tsr1TSR1 ribosome maturation factor. (850 aa)
utp15UTP15 small subunit processome component. (528 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (289 aa)
nop2NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (688 aa)
dis3DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (951 aa)
LOC103482313Neuroguidin, EIF4E binding protein. (447 aa)
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (475 aa)
ENSPREP00000016825Low density lipoprotein receptor class A domain containing 4b. (255 aa)
exosc3Exosome component 3. (273 aa)
dhx37DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1154 aa)
exosc8Exosome component 8. (279 aa)
LOC103476760DEAH (Asp-Glu-Ala-His) box polypeptide 32b. (738 aa)
pwp1PWP1 homolog, endonuclein. (493 aa)
tgs1Uncharacterized protein. (734 aa)
nip7NIP7 nucleolar pre-rRNA processing protein. (133 aa)
cebpzCCAAT enhancer binding protein zeta. (976 aa)
utp18WD_REPEATS_REGION domain-containing protein. (533 aa)
pa2g4Proliferation-associated 2G4, a. (390 aa)
aampAngio-associated, migratory cell protein. (434 aa)
LOC103463292Usher syndrome 1C binding protein 1. (792 aa)
ipo8Importin N-terminal domain-containing protein. (1048 aa)
gnl1Guanine nucleotide binding protein-like 1. (615 aa)
wdr61WD repeat domain 61. (305 aa)
tsr2TSR2 ribosome maturation factor. (173 aa)
abt1Activator of basal transcription 1. (274 aa)
utp6UTP6 small subunit processome component. (603 aa)
utp20UTP20 small subunit processome component. (2602 aa)
dnttip2Deoxynucleotidyltransferase, terminal, interacting protein 2. (833 aa)
aatfApoptosis antagonizing transcription factor. (548 aa)
krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
helz2C3H1-type domain-containing protein. (2437 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
wdr12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
ENSPREP00000020870Glomulin, FKBP associated protein b. (493 aa)
nop58NOP58 ribonucleoprotein homolog (yeast). (455 aa)
rbm28RNA binding motif protein 28. (760 aa)
exosc2Exosome component 2. (293 aa)
ddx54ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (855 aa)
Rrp15Ribosomal RNA processing 15 homolog. (281 aa)
ddx24DEAD (Asp-Glu-Ala-Asp) box helicase 24. (828 aa)
rpf1Ribosome production factor 1 homolog. (350 aa)
kri1KRI1 homolog. (752 aa)
rsl24d1Ribosomal L24 domain containing 1. (164 aa)
ftsj3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (859 aa)
ddx56DEAD (Asp-Glu-Ala-Asp) box helicase 56. (565 aa)
nle1Notchless homolog 1 (Drosophila). (478 aa)
noc2lNOC2-like nucleolar associated transcriptional repressor. (556 aa)
LOC103482453UTP14C small subunit processome component. (763 aa)
bop1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (751 aa)
cep152Centrosomal protein 152. (1040 aa)
ddx47DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (499 aa)
Ddx27DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family. (340 aa)
LOC103461154RNA binding motif protein 7. (262 aa)
LOC103482370Uncharacterized protein. (834 aa)
LOC103473717PWP2 small subunit processome component. (914 aa)
dcaf13Ddb1 and cul4 associated factor 13. (445 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (955 aa)
Heatr1BP28CT domain-containing protein. (345 aa)
ENSPREP00000024047Uncharacterized protein. (150 aa)
exosc10Exosome component 10. (892 aa)
rrp7aRibosomal RNA processing 7 homolog A. (306 aa)
rsl1d1Ribosomal L1 domain containing 1. (393 aa)
ddx55RNA helicase. (592 aa)
wdr46WD repeat domain 46. (553 aa)
ddx52DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (654 aa)
mphosph6M-phase phosphoprotein 6. (134 aa)
nop14NOP14 nucleolar protein homolog (yeast). (871 aa)
ZFC3H1Zinc finger C3H1-type containing. (2064 aa)
gpatch4G patch domain containing 4. (370 aa)
wdr36WD repeat domain 36. (793 aa)
mak16Protein MAK16 homolog; Belongs to the MAK16 family. (282 aa)
brix1Brix domain containing 2. (374 aa)
dnajc21DnaJ heat shock protein family (Hsp40) member C21. (539 aa)
exosc5Exosome component 5. (236 aa)
pak1ip1PAK1 interacting protein 1. (361 aa)
ENSPREP00000026599Exosome component 7. (210 aa)
fblFibrillarin. (310 aa)
LOC103467472Nuclear receptor coactivator 6. (2360 aa)
LOC103470843Uncharacterized protein. (680 aa)
utp4UTP4 small subunit processome component. (684 aa)
fcf1FCF1 rRNA-processing protein. (197 aa)
sdad1Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (682 aa)
ENSPREP00000028727Uncharacterized protein. (64 aa)
Wdr3Uncharacterized protein. (97 aa)
pum3CPL domain-containing protein. (440 aa)
exosc6Exosome component 6. (274 aa)
ddx10RNA helicase. (817 aa)
LOC103467913Premelanosome protein b. (610 aa)
lyarLy1 antibody reactive homolog (mouse). (322 aa)
gtpbp4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (604 aa)
rrs1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (308 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
znf593Zinc finger protein 593. (129 aa)
rpf2Ribosome production factor 2 homolog. (305 aa)
retreg1Reticulophagy regulator 1. (336 aa)
znf622Zinc finger protein 622. (459 aa)
LOC103467366Peptidase_M24 domain-containing protein. (377 aa)
rrp12Ribosomal RNA processing 12 homolog. (1289 aa)
ltv1LTV1 ribosome biogenesis factor. (491 aa)
nsa2NSA2 ribosome biogenesis homolog (S. cerevisiae). (242 aa)
nop56NOP56 ribonucleoprotein homolog. (530 aa)
ebna1bp2EBNA1 binding protein 2. (309 aa)
zcchc8Zinc finger, CCHC domain containing 8. (685 aa)
eif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (255 aa)
surf6Surfeit 6. (305 aa)
gnl3lGuanine nucleotide binding protein-like 3 (nucleolar)-like. (551 aa)
nop9Uncharacterized protein. (686 aa)
pes1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (548 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (665 aa)
rrp36Ribosomal RNA processing 36. (349 aa)
ipo7Importin 7. (1039 aa)
ENSPREP00000034242Uncharacterized protein. (694 aa)
rbm34RNA binding motif protein 34. (415 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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