(71 nodes) Small-subunit processome, and Ribosomal small subunit biogenesis network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pdcd11	Programmed cell death 11. (1810 aa)
	pno1	Partner of NOB1 homolog. (252 aa)
	LOC103466821	Zona pellucida glycoprotein d. (394 aa)
	rtca	RNA 3'-terminal phosphate cyclase. (366 aa)
	bud23	BUD23 rRNA methyltransferase and ribosome maturation factor. (391 aa)
	riok2	RIO kinase 2 (yeast). (520 aa)
	utp23	UTP23 small subunit processome component. (255 aa)
	bms1	BMS1 ribosome biogenesis factor. (1311 aa)
	dimt1	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (338 aa)
	rrp9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (483 aa)
	bysl	Bystin-like. (442 aa)
	esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae). (770 aa)
	nol10	Nucleolar protein 10. (718 aa)
	nol6	Nucleolar protein 6. (1145 aa)
	wdr43	WD repeat domain 43. (651 aa)
	utp25	UTP25 small subunit processor component. (748 aa)
	utp3	UTP3 small subunit processome component. (472 aa)
	ENSPREP00000008270	WD_REPEATS_REGION domain-containing protein. (129 aa)
	utp11	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (252 aa)
	ENSPREP00000008920	Uncharacterized protein. (97 aa)
	gcc1	GRIP and coiled-coil domain containing 1. (757 aa)
	imp3	IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
	noc4l	Nucleolar complex associated 4 homolog. (526 aa)
	nob1	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (457 aa)
	glmn	Glomulin, FKBP associated protein a. (611 aa)
	rcl1	RNA terminal phosphate cyclase-like 1. (372 aa)
	nom1	Nucleolar protein with MIF4G domain 1. (830 aa)
	tsr1	TSR1 ribosome maturation factor. (850 aa)
	utp15	UTP15 small subunit processome component. (528 aa)
	emg1	EMG1 N1-specific pseudouridine methyltransferase. (289 aa)
	LOC103482313	Neuroguidin, EIF4E binding protein. (447 aa)
	ddx49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (475 aa)
	dhx37	DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1154 aa)
	utp18	WD_REPEATS_REGION domain-containing protein. (533 aa)
	LOC103463292	Usher syndrome 1C binding protein 1. (792 aa)
	abt1	Activator of basal transcription 1. (274 aa)
	utp6	UTP6 small subunit processome component. (603 aa)
	utp20	UTP20 small subunit processome component. (2602 aa)
	dnttip2	Deoxynucleotidyltransferase, terminal, interacting protein 2. (833 aa)
	aatf	Apoptosis antagonizing transcription factor. (548 aa)
	krr1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
	imp4	IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
	ENSPREP00000020870	Glomulin, FKBP associated protein b. (493 aa)
	nop58	NOP58 ribonucleoprotein homolog (yeast). (455 aa)
	kri1	KRI1 homolog. (752 aa)
	LOC103482453	UTP14C small subunit processome component. (763 aa)
	ddx47	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (499 aa)
	LOC103473717	PWP2 small subunit processome component. (914 aa)
	dcaf13	Ddb1 and cul4 associated factor 13. (445 aa)
	nat10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (955 aa)
	Heatr1	BP28CT domain-containing protein. (345 aa)
	ENSPREP00000024047	Uncharacterized protein. (150 aa)
	rrp7a	Ribosomal RNA processing 7 homolog A. (306 aa)
	wdr46	WD repeat domain 46. (553 aa)
	ddx52	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (654 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (871 aa)
	wdr36	WD repeat domain 36. (793 aa)
	fbl	Fibrillarin. (310 aa)
	LOC103467472	Nuclear receptor coactivator 6. (2360 aa)
	utp4	UTP4 small subunit processome component. (684 aa)
	fcf1	FCF1 rRNA-processing protein. (197 aa)
	ENSPREP00000028727	Uncharacterized protein. (64 aa)
	Wdr3	Uncharacterized protein. (97 aa)
	ddx10	RNA helicase. (817 aa)
	LOC103467913	Premelanosome protein b. (610 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	rrp12	Ribosomal RNA processing 12 homolog. (1289 aa)
	ltv1	LTV1 ribosome biogenesis factor. (491 aa)
	nop56	NOP56 ribonucleoprotein homolog. (530 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (665 aa)
	rrp36	Ribosomal RNA processing 36. (349 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008270	ENSPREP00000008920	ENSPREP00000008270	ENSPREP00000008920	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
ENSPREP00000008270	ENSPREP00000020870	ENSPREP00000008270	ENSPREP00000020870	WD_REPEATS_REGION domain-containing protein.	Glomulin, FKBP associated protein b.	0.945
ENSPREP00000008270	ENSPREP00000024047	ENSPREP00000008270	ENSPREP00000024047	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.992
ENSPREP00000008270	ENSPREP00000028727	ENSPREP00000008270	ENSPREP00000028727	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.996
ENSPREP00000008270	Heatr1	ENSPREP00000008270	ENSPREP00000024035	WD_REPEATS_REGION domain-containing protein.	BP28CT domain-containing protein.	0.992
ENSPREP00000008270	LOC103463292	ENSPREP00000008270	ENSPREP00000018662	WD_REPEATS_REGION domain-containing protein.	Usher syndrome 1C binding protein 1.	0.935
ENSPREP00000008270	LOC103466821	ENSPREP00000008270	ENSPREP00000001438	WD_REPEATS_REGION domain-containing protein.	Zona pellucida glycoprotein d.	0.952
ENSPREP00000008270	LOC103467472	ENSPREP00000008270	ENSPREP00000027241	WD_REPEATS_REGION domain-containing protein.	Nuclear receptor coactivator 6.	0.882
ENSPREP00000008270	LOC103467913	ENSPREP00000008270	ENSPREP00000028928	WD_REPEATS_REGION domain-containing protein.	Premelanosome protein b.	0.970
ENSPREP00000008270	LOC103473717	ENSPREP00000008270	ENSPREP00000023564	WD_REPEATS_REGION domain-containing protein.	PWP2 small subunit processome component.	0.999
ENSPREP00000008270	LOC103482313	ENSPREP00000008270	ENSPREP00000016575	WD_REPEATS_REGION domain-containing protein.	Neuroguidin, EIF4E binding protein.	0.974
ENSPREP00000008270	LOC103482453	ENSPREP00000008270	ENSPREP00000022763	WD_REPEATS_REGION domain-containing protein.	UTP14C small subunit processome component.	0.995
ENSPREP00000008270	Wdr3	ENSPREP00000008270	ENSPREP00000028739	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.996
ENSPREP00000008270	aatf	ENSPREP00000008270	ENSPREP00000019969	WD_REPEATS_REGION domain-containing protein.	Apoptosis antagonizing transcription factor.	0.994
ENSPREP00000008270	abt1	ENSPREP00000008270	ENSPREP00000019324	WD_REPEATS_REGION domain-containing protein.	Activator of basal transcription 1.	0.625
ENSPREP00000008270	bms1	ENSPREP00000008270	ENSPREP00000003768	WD_REPEATS_REGION domain-containing protein.	BMS1 ribosome biogenesis factor.	0.998
ENSPREP00000008270	bud23	ENSPREP00000008270	ENSPREP00000002208	WD_REPEATS_REGION domain-containing protein.	BUD23 rRNA methyltransferase and ribosome maturation factor.	0.535
ENSPREP00000008270	bysl	ENSPREP00000008270	ENSPREP00000006398	WD_REPEATS_REGION domain-containing protein.	Bystin-like.	0.997
ENSPREP00000008270	dcaf13	ENSPREP00000008270	ENSPREP00000023789	WD_REPEATS_REGION domain-containing protein.	Ddb1 and cul4 associated factor 13.	0.996
ENSPREP00000008270	ddx10	ENSPREP00000008270	ENSPREP00000028905	WD_REPEATS_REGION domain-containing protein.	RNA helicase.	0.790