STRINGSTRING
pdcd11 pdcd11 bms1 bms1 nol10 nol10 nol6 nol6 wdr43 wdr43 utp3 utp3 ENSPREP00000008270 ENSPREP00000008270 utp11 utp11 ENSPREP00000008920 ENSPREP00000008920 imp3 imp3 noc4l noc4l utp15 utp15 emg1 emg1 LOC103482313 LOC103482313 utp18 utp18 utp6 utp6 utp20 utp20 aatf aatf krr1 krr1 imp4 imp4 LOC103482453 LOC103482453 LOC103473717 LOC103473717 dcaf13 dcaf13 nat10 nat10 wdr46 wdr46 nop14 nop14 wdr36 wdr36 utp4 utp4 fcf1 fcf1 mphosph10 mphosph10
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pdcd11Programmed cell death 11. (1810 aa)
bms1BMS1 ribosome biogenesis factor. (1311 aa)
nol10Nucleolar protein 10. (718 aa)
nol6Nucleolar protein 6. (1145 aa)
wdr43WD repeat domain 43. (651 aa)
utp3UTP3 small subunit processome component. (472 aa)
ENSPREP00000008270WD_REPEATS_REGION domain-containing protein. (129 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (252 aa)
ENSPREP00000008920Uncharacterized protein. (97 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
noc4lNucleolar complex associated 4 homolog. (526 aa)
utp15UTP15 small subunit processome component. (528 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (289 aa)
LOC103482313Neuroguidin, EIF4E binding protein. (447 aa)
utp18WD_REPEATS_REGION domain-containing protein. (533 aa)
utp6UTP6 small subunit processome component. (603 aa)
utp20UTP20 small subunit processome component. (2602 aa)
aatfApoptosis antagonizing transcription factor. (548 aa)
krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
LOC103482453UTP14C small subunit processome component. (763 aa)
LOC103473717PWP2 small subunit processome component. (914 aa)
dcaf13Ddb1 and cul4 associated factor 13. (445 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (955 aa)
wdr46WD repeat domain 46. (553 aa)
nop14NOP14 nucleolar protein homolog (yeast). (871 aa)
wdr36WD repeat domain 36. (793 aa)
utp4UTP4 small subunit processome component. (684 aa)
fcf1FCF1 rRNA-processing protein. (197 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (665 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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