(11 nodes) Small-subunit processome network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nol6	Nucleolar protein 6. (1145 aa)
	wdr43	WD repeat domain 43. (651 aa)
	ENSPREP00000008270	WD_REPEATS_REGION domain-containing protein. (129 aa)
	utp15	UTP15 small subunit processome component. (528 aa)
	utp18	WD_REPEATS_REGION domain-containing protein. (533 aa)
	utp6	UTP6 small subunit processome component. (603 aa)
	LOC103482453	UTP14C small subunit processome component. (763 aa)
	dcaf13	Ddb1 and cul4 associated factor 13. (445 aa)
	wdr46	WD repeat domain 46. (553 aa)
	wdr36	WD repeat domain 36. (793 aa)
	utp4	UTP4 small subunit processome component. (684 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008270	LOC103482453	ENSPREP00000008270	ENSPREP00000022763	WD_REPEATS_REGION domain-containing protein.	UTP14C small subunit processome component.	0.995
ENSPREP00000008270	dcaf13	ENSPREP00000008270	ENSPREP00000023789	WD_REPEATS_REGION domain-containing protein.	Ddb1 and cul4 associated factor 13.	0.996
ENSPREP00000008270	nol6	ENSPREP00000008270	ENSPREP00000006993	WD_REPEATS_REGION domain-containing protein.	Nucleolar protein 6.	0.999
ENSPREP00000008270	utp15	ENSPREP00000008270	ENSPREP00000015417	WD_REPEATS_REGION domain-containing protein.	UTP15 small subunit processome component.	0.998
ENSPREP00000008270	utp18	ENSPREP00000008270	ENSPREP00000018372	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
ENSPREP00000008270	utp4	ENSPREP00000008270	ENSPREP00000028259	WD_REPEATS_REGION domain-containing protein.	UTP4 small subunit processome component.	0.999
ENSPREP00000008270	utp6	ENSPREP00000008270	ENSPREP00000019389	WD_REPEATS_REGION domain-containing protein.	UTP6 small subunit processome component.	0.999
ENSPREP00000008270	wdr36	ENSPREP00000008270	ENSPREP00000025383	WD_REPEATS_REGION domain-containing protein.	WD repeat domain 36.	0.999
ENSPREP00000008270	wdr43	ENSPREP00000008270	ENSPREP00000007191	WD_REPEATS_REGION domain-containing protein.	WD repeat domain 43.	0.997
ENSPREP00000008270	wdr46	ENSPREP00000008270	ENSPREP00000024683	WD_REPEATS_REGION domain-containing protein.	WD repeat domain 46.	0.998
LOC103482453	ENSPREP00000008270	ENSPREP00000022763	ENSPREP00000008270	UTP14C small subunit processome component.	WD_REPEATS_REGION domain-containing protein.	0.995
LOC103482453	dcaf13	ENSPREP00000022763	ENSPREP00000023789	UTP14C small subunit processome component.	Ddb1 and cul4 associated factor 13.	0.999
LOC103482453	nol6	ENSPREP00000022763	ENSPREP00000006993	UTP14C small subunit processome component.	Nucleolar protein 6.	0.998
LOC103482453	utp15	ENSPREP00000022763	ENSPREP00000015417	UTP14C small subunit processome component.	UTP15 small subunit processome component.	0.994
LOC103482453	utp18	ENSPREP00000022763	ENSPREP00000018372	UTP14C small subunit processome component.	WD_REPEATS_REGION domain-containing protein.	0.998
LOC103482453	utp4	ENSPREP00000022763	ENSPREP00000028259	UTP14C small subunit processome component.	UTP4 small subunit processome component.	0.999
LOC103482453	utp6	ENSPREP00000022763	ENSPREP00000019389	UTP14C small subunit processome component.	UTP6 small subunit processome component.	0.998
LOC103482453	wdr36	ENSPREP00000022763	ENSPREP00000025383	UTP14C small subunit processome component.	WD repeat domain 36.	0.998
LOC103482453	wdr43	ENSPREP00000022763	ENSPREP00000007191	UTP14C small subunit processome component.	WD repeat domain 43.	0.998
LOC103482453	wdr46	ENSPREP00000022763	ENSPREP00000024683	UTP14C small subunit processome component.	WD repeat domain 46.	0.998