(7 nodes) Mixed, incl. Noc4p-Nop14p complex, and Nucleologenesis network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pdcd11	Programmed cell death 11. (1810 aa)
	ENSPREP00000008920	Uncharacterized protein. (97 aa)
	noc4l	Nucleolar complex associated 4 homolog. (526 aa)
	emg1	EMG1 N1-specific pseudouridine methyltransferase. (289 aa)
	utp20	UTP20 small subunit processome component. (2602 aa)
	LOC103473717	PWP2 small subunit processome component. (914 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (871 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008920	LOC103473717	ENSPREP00000008920	ENSPREP00000023564	Uncharacterized protein.	PWP2 small subunit processome component.	0.999
ENSPREP00000008920	emg1	ENSPREP00000008920	ENSPREP00000015425	Uncharacterized protein.	EMG1 N1-specific pseudouridine methyltransferase.	0.982
ENSPREP00000008920	noc4l	ENSPREP00000008920	ENSPREP00000010537	Uncharacterized protein.	Nucleolar complex associated 4 homolog.	0.998
ENSPREP00000008920	nop14	ENSPREP00000008920	ENSPREP00000025074	Uncharacterized protein.	NOP14 nucleolar protein homolog (yeast).	0.999
ENSPREP00000008920	pdcd11	ENSPREP00000008920	ENSPREP00000000637	Uncharacterized protein.	Programmed cell death 11.	0.999
ENSPREP00000008920	utp20	ENSPREP00000008920	ENSPREP00000019708	Uncharacterized protein.	UTP20 small subunit processome component.	0.999
LOC103473717	ENSPREP00000008920	ENSPREP00000023564	ENSPREP00000008920	PWP2 small subunit processome component.	Uncharacterized protein.	0.999
LOC103473717	emg1	ENSPREP00000023564	ENSPREP00000015425	PWP2 small subunit processome component.	EMG1 N1-specific pseudouridine methyltransferase.	0.995
LOC103473717	noc4l	ENSPREP00000023564	ENSPREP00000010537	PWP2 small subunit processome component.	Nucleolar complex associated 4 homolog.	0.998
LOC103473717	nop14	ENSPREP00000023564	ENSPREP00000025074	PWP2 small subunit processome component.	NOP14 nucleolar protein homolog (yeast).	0.998
LOC103473717	pdcd11	ENSPREP00000023564	ENSPREP00000000637	PWP2 small subunit processome component.	Programmed cell death 11.	0.999
LOC103473717	utp20	ENSPREP00000023564	ENSPREP00000019708	PWP2 small subunit processome component.	UTP20 small subunit processome component.	0.999
emg1	ENSPREP00000008920	ENSPREP00000015425	ENSPREP00000008920	EMG1 N1-specific pseudouridine methyltransferase.	Uncharacterized protein.	0.982
emg1	LOC103473717	ENSPREP00000015425	ENSPREP00000023564	EMG1 N1-specific pseudouridine methyltransferase.	PWP2 small subunit processome component.	0.995
emg1	noc4l	ENSPREP00000015425	ENSPREP00000010537	EMG1 N1-specific pseudouridine methyltransferase.	Nucleolar complex associated 4 homolog.	0.999
emg1	nop14	ENSPREP00000015425	ENSPREP00000025074	EMG1 N1-specific pseudouridine methyltransferase.	NOP14 nucleolar protein homolog (yeast).	0.999
emg1	pdcd11	ENSPREP00000015425	ENSPREP00000000637	EMG1 N1-specific pseudouridine methyltransferase.	Programmed cell death 11.	0.994
emg1	utp20	ENSPREP00000015425	ENSPREP00000019708	EMG1 N1-specific pseudouridine methyltransferase.	UTP20 small subunit processome component.	0.994
noc4l	ENSPREP00000008920	ENSPREP00000010537	ENSPREP00000008920	Nucleolar complex associated 4 homolog.	Uncharacterized protein.	0.998
noc4l	LOC103473717	ENSPREP00000010537	ENSPREP00000023564	Nucleolar complex associated 4 homolog.	PWP2 small subunit processome component.	0.998