(12 nodes) Mixed, incl. Endonucleolytic cleavage involved in rRNA processing, and RNA helicase, DEAD-box type, Q motif network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103466821	Zona pellucida glycoprotein d. (394 aa)
	utp23	UTP23 small subunit processome component. (255 aa)
	esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae). (770 aa)
	utp25	UTP25 small subunit processor component. (748 aa)
	nom1	Nucleolar protein with MIF4G domain 1. (830 aa)
	ddx49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (475 aa)
	abt1	Activator of basal transcription 1. (274 aa)
	kri1	KRI1 homolog. (752 aa)
	ddx47	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (499 aa)
	ddx52	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (654 aa)
	ddx10	RNA helicase. (817 aa)
	rrp36	Ribosomal RNA processing 36. (349 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103466821	abt1	ENSPREP00000001438	ENSPREP00000019324	Zona pellucida glycoprotein d.	Activator of basal transcription 1.	0.944
LOC103466821	ddx10	ENSPREP00000001438	ENSPREP00000028905	Zona pellucida glycoprotein d.	RNA helicase.	0.681
LOC103466821	ddx47	ENSPREP00000001438	ENSPREP00000023070	Zona pellucida glycoprotein d.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	0.869
LOC103466821	ddx49	ENSPREP00000001438	ENSPREP00000016576	Zona pellucida glycoprotein d.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.803
LOC103466821	ddx52	ENSPREP00000001438	ENSPREP00000025008	Zona pellucida glycoprotein d.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.956
LOC103466821	esf1	ENSPREP00000001438	ENSPREP00000006399	Zona pellucida glycoprotein d.	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).	0.898
LOC103466821	kri1	ENSPREP00000001438	ENSPREP00000021832	Zona pellucida glycoprotein d.	KRI1 homolog.	0.972
LOC103466821	nom1	ENSPREP00000001438	ENSPREP00000013106	Zona pellucida glycoprotein d.	Nucleolar protein with MIF4G domain 1.	0.945
LOC103466821	rrp36	ENSPREP00000001438	ENSPREP00000033623	Zona pellucida glycoprotein d.	Ribosomal RNA processing 36.	0.737
LOC103466821	utp23	ENSPREP00000001438	ENSPREP00000003411	Zona pellucida glycoprotein d.	UTP23 small subunit processome component.	0.986
LOC103466821	utp25	ENSPREP00000001438	ENSPREP00000007784	Zona pellucida glycoprotein d.	UTP25 small subunit processor component.	0.800
abt1	LOC103466821	ENSPREP00000019324	ENSPREP00000001438	Activator of basal transcription 1.	Zona pellucida glycoprotein d.	0.944
abt1	ddx10	ENSPREP00000019324	ENSPREP00000028905	Activator of basal transcription 1.	RNA helicase.	0.984
abt1	ddx47	ENSPREP00000019324	ENSPREP00000023070	Activator of basal transcription 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	0.821
abt1	ddx49	ENSPREP00000019324	ENSPREP00000016576	Activator of basal transcription 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.984
abt1	ddx52	ENSPREP00000019324	ENSPREP00000025008	Activator of basal transcription 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.805
abt1	esf1	ENSPREP00000019324	ENSPREP00000006399	Activator of basal transcription 1.	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).	0.982
abt1	kri1	ENSPREP00000019324	ENSPREP00000021832	Activator of basal transcription 1.	KRI1 homolog.	0.645
abt1	nom1	ENSPREP00000019324	ENSPREP00000013106	Activator of basal transcription 1.	Nucleolar protein with MIF4G domain 1.	0.952
abt1	rrp36	ENSPREP00000019324	ENSPREP00000033623	Activator of basal transcription 1.	Ribosomal RNA processing 36.	0.994