(6 nodes) Mixed, incl. rRNA 5-end processing, and Inflammatory response to wounding network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	utp25	UTP25 small subunit processor component. (748 aa)
	ddx49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (475 aa)
	abt1	Activator of basal transcription 1. (274 aa)
	ddx47	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (499 aa)
	ddx52	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (654 aa)
	rrp36	Ribosomal RNA processing 36. (349 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
abt1	ddx47	ENSPREP00000019324	ENSPREP00000023070	Activator of basal transcription 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	0.821
abt1	ddx49	ENSPREP00000019324	ENSPREP00000016576	Activator of basal transcription 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.984
abt1	ddx52	ENSPREP00000019324	ENSPREP00000025008	Activator of basal transcription 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.805
abt1	rrp36	ENSPREP00000019324	ENSPREP00000033623	Activator of basal transcription 1.	Ribosomal RNA processing 36.	0.994
abt1	utp25	ENSPREP00000019324	ENSPREP00000007784	Activator of basal transcription 1.	UTP25 small subunit processor component.	0.987
ddx47	abt1	ENSPREP00000023070	ENSPREP00000019324	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	Activator of basal transcription 1.	0.821
ddx47	ddx49	ENSPREP00000023070	ENSPREP00000016576	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.962
ddx47	ddx52	ENSPREP00000023070	ENSPREP00000025008	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.981
ddx47	rrp36	ENSPREP00000023070	ENSPREP00000033623	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	Ribosomal RNA processing 36.	0.821
ddx47	utp25	ENSPREP00000023070	ENSPREP00000007784	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	UTP25 small subunit processor component.	0.958
ddx49	abt1	ENSPREP00000016576	ENSPREP00000019324	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	Activator of basal transcription 1.	0.984
ddx49	ddx47	ENSPREP00000016576	ENSPREP00000023070	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	0.962
ddx49	ddx52	ENSPREP00000016576	ENSPREP00000025008	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.975
ddx49	rrp36	ENSPREP00000016576	ENSPREP00000033623	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	Ribosomal RNA processing 36.	0.817
ddx49	utp25	ENSPREP00000016576	ENSPREP00000007784	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	UTP25 small subunit processor component.	0.977
ddx52	abt1	ENSPREP00000025008	ENSPREP00000019324	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	Activator of basal transcription 1.	0.805
ddx52	ddx47	ENSPREP00000025008	ENSPREP00000023070	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	0.981
ddx52	ddx49	ENSPREP00000025008	ENSPREP00000016576	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.975
ddx52	rrp36	ENSPREP00000025008	ENSPREP00000033623	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	Ribosomal RNA processing 36.	0.885
ddx52	utp25	ENSPREP00000025008	ENSPREP00000007784	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	UTP25 small subunit processor component.	0.961