(16 nodes) Abr/Bcr, and GTPase-activator protein for Rho-like GTPases network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chn1	Chimerin 1. (276 aa)
	ENSPREP00000008191	Uncharacterized protein. (90 aa)
	ABR	ABR activator of RhoGEF and GTPase. (1099 aa)
	LOC103473601	BCR activator of RhoGEF and GTPase. (1374 aa)
	LOC103460833	Chimerin 1. (458 aa)
	ENSPREP00000016059	Rho GTPase activating protein 27. (546 aa)
	ENSPREP00000016078	SH3 domain-containing protein. (286 aa)
	ENSPREP00000017700	Rho-GAP domain-containing protein. (210 aa)
	Bcr	Si:dkey-91m11.5. (609 aa)
	ENSPREP00000024183	Rho-GAP domain-containing protein. (214 aa)
	myo9b	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2278 aa)
	LOC103460104	Rho GTPase activating protein 15. (454 aa)
	LOC103479478	Uncharacterized protein. (866 aa)
	FMN1	Formin 1. (1260 aa)
	arhgap11a	Rho GTPase activating protein 11A. (966 aa)
	LOC103476916	Rho-GAP domain-containing protein. (413 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABR	myo9b	ENSPREP00000008749	ENSPREP00000025222	ABR activator of RhoGEF and GTPase.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.593
Bcr	ENSPREP00000024183	ENSPREP00000024152	ENSPREP00000024183	Si:dkey-91m11.5.	Rho-GAP domain-containing protein.	0.897
Bcr	myo9b	ENSPREP00000024152	ENSPREP00000025222	Si:dkey-91m11.5.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.593
ENSPREP00000008191	myo9b	ENSPREP00000008191	ENSPREP00000025222	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.655
ENSPREP00000016059	ENSPREP00000016078	ENSPREP00000016059	ENSPREP00000016078	Rho GTPase activating protein 27.	SH3 domain-containing protein.	0.485
ENSPREP00000016059	myo9b	ENSPREP00000016059	ENSPREP00000025222	Rho GTPase activating protein 27.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.568
ENSPREP00000016078	ENSPREP00000016059	ENSPREP00000016078	ENSPREP00000016059	SH3 domain-containing protein.	Rho GTPase activating protein 27.	0.485
ENSPREP00000016078	myo9b	ENSPREP00000016078	ENSPREP00000025222	SH3 domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.568
ENSPREP00000017700	myo9b	ENSPREP00000017700	ENSPREP00000025222	Rho-GAP domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.568
ENSPREP00000024183	Bcr	ENSPREP00000024183	ENSPREP00000024152	Rho-GAP domain-containing protein.	Si:dkey-91m11.5.	0.897
ENSPREP00000024183	myo9b	ENSPREP00000024183	ENSPREP00000025222	Rho-GAP domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.593
FMN1	arhgap11a	ENSPREP00000029783	ENSPREP00000029836	Formin 1.	Rho GTPase activating protein 11A.	0.647
FMN1	myo9b	ENSPREP00000029783	ENSPREP00000025222	Formin 1.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.490
LOC103460104	myo9b	ENSPREP00000025311	ENSPREP00000025222	Rho GTPase activating protein 15.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.568
LOC103473601	myo9b	ENSPREP00000010963	ENSPREP00000025222	BCR activator of RhoGEF and GTPase.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.593
LOC103479478	myo9b	ENSPREP00000028548	ENSPREP00000025222	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.568
arhgap11a	FMN1	ENSPREP00000029836	ENSPREP00000029783	Rho GTPase activating protein 11A.	Formin 1.	0.647
myo9b	ABR	ENSPREP00000025222	ENSPREP00000008749	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	ABR activator of RhoGEF and GTPase.	0.593
myo9b	Bcr	ENSPREP00000025222	ENSPREP00000024152	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Si:dkey-91m11.5.	0.593
myo9b	ENSPREP00000008191	ENSPREP00000025222	ENSPREP00000008191	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.655