(5 nodes) Mixed, incl. CBF/Mak21 family, and ATP-dependent RNA helicase DEAD-box, conserved site network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cebpz	CCAAT enhancer binding protein zeta. (976 aa)
	rbm28	RNA binding motif protein 28. (760 aa)
	ddx24	DEAD (Asp-Glu-Ala-Asp) box helicase 24. (828 aa)
	ddx56	DEAD (Asp-Glu-Ala-Asp) box helicase 56. (565 aa)
	rbm34	RNA binding motif protein 34. (415 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cebpz	ddx24	ENSPREP00000018283	ENSPREP00000021487	CCAAT enhancer binding protein zeta.	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	0.943
cebpz	ddx56	ENSPREP00000018283	ENSPREP00000022478	CCAAT enhancer binding protein zeta.	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	0.985
cebpz	rbm28	ENSPREP00000018283	ENSPREP00000021140	CCAAT enhancer binding protein zeta.	RNA binding motif protein 28.	0.987
cebpz	rbm34	ENSPREP00000018283	ENSPREP00000034303	CCAAT enhancer binding protein zeta.	RNA binding motif protein 34.	0.978
ddx24	cebpz	ENSPREP00000021487	ENSPREP00000018283	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	CCAAT enhancer binding protein zeta.	0.943
ddx24	ddx56	ENSPREP00000021487	ENSPREP00000022478	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	0.958
ddx24	rbm28	ENSPREP00000021487	ENSPREP00000021140	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	RNA binding motif protein 28.	0.982
ddx24	rbm34	ENSPREP00000021487	ENSPREP00000034303	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	RNA binding motif protein 34.	0.938
ddx56	cebpz	ENSPREP00000022478	ENSPREP00000018283	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	CCAAT enhancer binding protein zeta.	0.985
ddx56	ddx24	ENSPREP00000022478	ENSPREP00000021487	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	0.958
ddx56	rbm28	ENSPREP00000022478	ENSPREP00000021140	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	RNA binding motif protein 28.	0.952
ddx56	rbm34	ENSPREP00000022478	ENSPREP00000034303	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	RNA binding motif protein 34.	0.963
rbm28	cebpz	ENSPREP00000021140	ENSPREP00000018283	RNA binding motif protein 28.	CCAAT enhancer binding protein zeta.	0.987
rbm28	ddx24	ENSPREP00000021140	ENSPREP00000021487	RNA binding motif protein 28.	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	0.982
rbm28	ddx56	ENSPREP00000021140	ENSPREP00000022478	RNA binding motif protein 28.	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	0.952
rbm28	rbm34	ENSPREP00000021140	ENSPREP00000034303	RNA binding motif protein 28.	RNA binding motif protein 34.	0.979
rbm34	cebpz	ENSPREP00000034303	ENSPREP00000018283	RNA binding motif protein 34.	CCAAT enhancer binding protein zeta.	0.978
rbm34	ddx24	ENSPREP00000034303	ENSPREP00000021487	RNA binding motif protein 34.	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	0.938
rbm34	ddx56	ENSPREP00000034303	ENSPREP00000022478	RNA binding motif protein 34.	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	0.963
rbm34	rbm28	ENSPREP00000034303	ENSPREP00000021140	RNA binding motif protein 34.	RNA binding motif protein 28.	0.979