STRINGSTRING
LOC103459897 LOC103459897 LOC103480121 LOC103480121 LOC103471994 LOC103471994 LOC103461168 LOC103461168 LOC103463948 LOC103463948 LOC103459724 LOC103459724 LOC103475093 LOC103475093 rabggtb rabggtb LOC103458514 LOC103458514 rab1a rab1a rabggta rabggta LOC103467862 LOC103467862 rab6a rab6a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC103459897Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. (550 aa)
LOC103480121ZRAB1B, member RAS oncogene family a. (201 aa)
LOC103471994RAB1A, member RAS oncogene family a. (209 aa)
LOC103461168Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (443 aa)
LOC103463948RAB6B, member RAS oncogene family a. (235 aa)
LOC103459724Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (450 aa)
LOC103475093Zgc:171927. (214 aa)
rabggtbGeranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (312 aa)
LOC103458514RAB15, member RAS oncogene family. (210 aa)
rab1aUncharacterized protein. (203 aa)
rabggtaRab geranylgeranyltransferase subunit alpha. (585 aa)
LOC103467862Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)
rab6aRAB6A, member RAS oncogene family. (208 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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