(78 nodes) Mixed, incl. Exocyst, and RAB geranylgeranylation network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103462186	UDENN FLCN/SMCR8-type domain-containing protein. (831 aa)
	LOC103468921	Si:dkey-27j5.5. (375 aa)
	dennd6a	DENN/MADD domain containing 6Aa. (610 aa)
	rab11fip2	RAB11 family interacting protein 2 (class I). (472 aa)
	c9orf72	Zgc:100846. (298 aa)
	LOC103459237	Calcium release activated channel regulator 2Ab. (683 aa)
	LOC103466291	Exocyst complex component 3-like 1. (778 aa)
	LOC103475299	Exocyst complex component 3-like 2b. (874 aa)
	exoc6	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (829 aa)
	ENSPREP00000005319	Uncharacterized protein. (628 aa)
	exoc4	Exocyst complex component 4. (994 aa)
	LOC103478506	Si:dkey-238d18.4. (404 aa)
	asap3	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2a. (869 aa)
	myo5a	Myosin VAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1841 aa)
	tnfaip2	Uncharacterized protein. (644 aa)
	exoc3l4	Exocyst complex component 3-like 4. (764 aa)
	LOC103471126	RUN and FYVE domain containing 1. (717 aa)
	tbc1d16	TBC1 domain family, member 16. (745 aa)
	LOC103472351	RAB25, member RAS oncogene family a. (215 aa)
	LOC103463721	RAB11B, member RAS oncogene family, b. (218 aa)
	LOC103463719	RAB11B, member RAS oncogene family, a. (280 aa)
	ENSPREP00000009740	EF-hand domain-containing protein. (151 aa)
	LOC103458179	RAB11 family interacting protein 5a (class I). (1442 aa)
	LOC103468194	RAB11 family interacting protein 4 (class II) a. (603 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	LOC103470525	Uncharacterized protein. (1229 aa)
	exoc7	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (716 aa)
	micall2	Mical-like 2a. (756 aa)
	LOC103463657	Methyl-CpG binding domain protein 3b; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1662 aa)
	LOC103460086	Uncharacterized protein. (206 aa)
	garem1	GRB2 associated, regulator of MAPK1. (869 aa)
	rab39b	Uncharacterized protein. (213 aa)
	LOC103460107	RAB11a, member RAS oncogene family. (215 aa)
	LOC103480080	Growth hormone regulated TBC protein 1b. (354 aa)
	exoc2	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (939 aa)
	rab4a	RAB4a, member RAS oncogene family. (225 aa)
	LOC103457353	RAB15, member RAS oncogene family. (213 aa)
	exoc5	Exocyst complex component 5. (707 aa)
	rab11fip1	Uncharacterized protein. (1299 aa)
	LOC103476194	Exocyst complex component 3-like 2a. (931 aa)
	LOC103468969	Si:dkey-245p14.4. (189 aa)
	dennd3	DENN/MADD domain containing 3a. (1265 aa)
	exoc3	Exocyst complex component 3. (750 aa)
	LOC103479775	RAB8A, member RAS oncogene family. (234 aa)
	rab8a	RAB8A, member RAS oncogene family. (206 aa)
	rab11fip4	RAB11 family interacting protein 4 (class II) b. (514 aa)
	LOC103471510	Uncharacterized protein. (1440 aa)
	LOC103466495	RAB3A interacting protein (rabin3)-like 1. (399 aa)
	rab28	Uncharacterized protein. (222 aa)
	LOC103479314	Uncharacterized protein. (220 aa)
	LOC103473793	RAB14, member RAS oncogene family. (197 aa)
	LOC103464795	Un-named sa1614. (1010 aa)
	LOC103466454	Myosin VA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1821 aa)
	rabl2b	RAB, member of RAS oncogene family-like 2. (205 aa)
	LOC103468408	Uncharacterized protein. (226 aa)
	rab10	RAB10, member RAS oncogene family. (225 aa)
	LOC103480609	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (809 aa)
	pter	Phosphotriesterase related. (349 aa)
	exoc8	Exocyst complex component 8. (685 aa)
	LOC103477555	RAB11a, member RAS oncogene family, like. (216 aa)
	LOC103477556	RAB25, member RAS oncogene family b. (209 aa)
	LOC103470772	Uncharacterized protein. (216 aa)
	rab12	RAB12, member RAS oncogene family. (244 aa)
	rab13	RAB13, member RAS oncogene family. (216 aa)
	ENSPREP00000026022	Uncharacterized protein. (202 aa)
	smcr8	Smith-Magenis syndrome chromosome region, candidate 8a. (960 aa)
	RAB11FIP3	RAB11 family interacting protein 3. (414 aa)
	rasef	RAS and EF-hand domain containing. (819 aa)
	wdr41	WD repeat domain 41. (449 aa)
	LOC103478638	UDENN domain-containing protein. (1198 aa)
	DENND2A	DENN domain containing 2A. (1045 aa)
	LOC103458854	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3. (1026 aa)
	exoc1	Exocyst complex component 1. (927 aa)
	LOC103481195	Calcium release activated channel regulator 2A. (717 aa)
	Rilpl2	Rab interacting lysosomal protein-like 2. (222 aa)
	rab3ip	RAB3A interacting protein (rabin3). (431 aa)
	LOC103474625	RAB4B, member RAS oncogene family. (220 aa)
	dennd5a	DENN/MADD domain containing 5A. (1265 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000005319	LOC103457353	ENSPREP00000005319	ENSPREP00000015259	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.465
ENSPREP00000005319	LOC103460086	ENSPREP00000005319	ENSPREP00000012723	Uncharacterized protein.	Uncharacterized protein.	0.465
ENSPREP00000005319	LOC103479775	ENSPREP00000005319	ENSPREP00000017912	Uncharacterized protein.	RAB8A, member RAS oncogene family.	0.465
ENSPREP00000005319	garem1	ENSPREP00000005319	ENSPREP00000013585	Uncharacterized protein.	GRB2 associated, regulator of MAPK1.	0.465
ENSPREP00000005319	rab10	ENSPREP00000005319	ENSPREP00000023923	Uncharacterized protein.	RAB10, member RAS oncogene family.	0.465
ENSPREP00000005319	rab13	ENSPREP00000005319	ENSPREP00000026006	Uncharacterized protein.	RAB13, member RAS oncogene family.	0.465
ENSPREP00000005319	rab8a	ENSPREP00000005319	ENSPREP00000018811	Uncharacterized protein.	RAB8A, member RAS oncogene family.	0.465
ENSPREP00000009740	LOC103466495	ENSPREP00000009740	ENSPREP00000019706	EF-hand domain-containing protein.	RAB3A interacting protein (rabin3)-like 1.	0.564
ENSPREP00000009740	LOC103468969	ENSPREP00000009740	ENSPREP00000017530	EF-hand domain-containing protein.	Si:dkey-245p14.4.	0.462
ENSPREP00000009740	LOC103480609	ENSPREP00000009740	ENSPREP00000024037	EF-hand domain-containing protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.510
ENSPREP00000009740	Rilpl2	ENSPREP00000009740	ENSPREP00000031354	EF-hand domain-containing protein.	Rab interacting lysosomal protein-like 2.	0.424
ENSPREP00000009740	exoc1	ENSPREP00000009740	ENSPREP00000029550	EF-hand domain-containing protein.	Exocyst complex component 1.	0.579
ENSPREP00000009740	exoc2	ENSPREP00000009740	ENSPREP00000014613	EF-hand domain-containing protein.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.569
ENSPREP00000009740	exoc4	ENSPREP00000009740	ENSPREP00000005337	EF-hand domain-containing protein.	Exocyst complex component 4.	0.580
ENSPREP00000009740	exoc5	ENSPREP00000009740	ENSPREP00000015957	EF-hand domain-containing protein.	Exocyst complex component 5.	0.532
ENSPREP00000009740	exoc6	ENSPREP00000009740	ENSPREP00000004644	EF-hand domain-containing protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.510
ENSPREP00000009740	exoc7	ENSPREP00000009740	ENSPREP00000011384	EF-hand domain-containing protein.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.547
ENSPREP00000009740	exoc8	ENSPREP00000009740	ENSPREP00000025385	EF-hand domain-containing protein.	Exocyst complex component 8.	0.518
ENSPREP00000009740	rab3ip	ENSPREP00000009740	ENSPREP00000032267	EF-hand domain-containing protein.	RAB3A interacting protein (rabin3).	0.564
ENSPREP00000026022	LOC103466495	ENSPREP00000026022	ENSPREP00000019706	Uncharacterized protein.	RAB3A interacting protein (rabin3)-like 1.	0.564