(5 nodes) Lipophagy, and Rab interacting lysosomal protein network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tbc1d17	TBC1 domain family, member 17. (625 aa)
	RAB7A	RAB7A, member RAS oncogene family. (207 aa)
	LOC103465062	RAB7a, member RAS oncogene family. (207 aa)
	rilp	Rab interacting lysosomal protein. (407 aa)
	LOC103465551	Si:dkey-13a21.4. (204 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103465062	LOC103465551	ENSPREP00000026260	ENSPREP00000032797	RAB7a, member RAS oncogene family.	Si:dkey-13a21.4.	0.928
LOC103465062	RAB7A	ENSPREP00000026260	ENSPREP00000017966	RAB7a, member RAS oncogene family.	RAB7A, member RAS oncogene family.	0.900
LOC103465062	rilp	ENSPREP00000026260	ENSPREP00000032280	RAB7a, member RAS oncogene family.	Rab interacting lysosomal protein.	0.950
LOC103465062	tbc1d17	ENSPREP00000026260	ENSPREP00000016349	RAB7a, member RAS oncogene family.	TBC1 domain family, member 17.	0.956
LOC103465551	LOC103465062	ENSPREP00000032797	ENSPREP00000026260	Si:dkey-13a21.4.	RAB7a, member RAS oncogene family.	0.928
LOC103465551	RAB7A	ENSPREP00000032797	ENSPREP00000017966	Si:dkey-13a21.4.	RAB7A, member RAS oncogene family.	0.928
LOC103465551	tbc1d17	ENSPREP00000032797	ENSPREP00000016349	Si:dkey-13a21.4.	TBC1 domain family, member 17.	0.929
RAB7A	LOC103465062	ENSPREP00000017966	ENSPREP00000026260	RAB7A, member RAS oncogene family.	RAB7a, member RAS oncogene family.	0.900
RAB7A	LOC103465551	ENSPREP00000017966	ENSPREP00000032797	RAB7A, member RAS oncogene family.	Si:dkey-13a21.4.	0.928
RAB7A	rilp	ENSPREP00000017966	ENSPREP00000032280	RAB7A, member RAS oncogene family.	Rab interacting lysosomal protein.	0.950
RAB7A	tbc1d17	ENSPREP00000017966	ENSPREP00000016349	RAB7A, member RAS oncogene family.	TBC1 domain family, member 17.	0.956
rilp	LOC103465062	ENSPREP00000032280	ENSPREP00000026260	Rab interacting lysosomal protein.	RAB7a, member RAS oncogene family.	0.950
rilp	RAB7A	ENSPREP00000032280	ENSPREP00000017966	Rab interacting lysosomal protein.	RAB7A, member RAS oncogene family.	0.950
tbc1d17	LOC103465062	ENSPREP00000016349	ENSPREP00000026260	TBC1 domain family, member 17.	RAB7a, member RAS oncogene family.	0.956
tbc1d17	LOC103465551	ENSPREP00000016349	ENSPREP00000032797	TBC1 domain family, member 17.	Si:dkey-13a21.4.	0.929
tbc1d17	RAB7A	ENSPREP00000016349	ENSPREP00000017966	TBC1 domain family, member 17.	RAB7A, member RAS oncogene family.	0.956