(16 nodes) Protein hydroxylation, and Collagen biosynthetic process network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	serpinf1	SERPIN domain-containing protein; Belongs to the serpin family. (431 aa)
	serpinh1	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family. (405 aa)
	crtap	Cartilage associated protein. (413 aa)
	LOC103461657	Uncharacterized protein. (1047 aa)
	LOC103476145	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family. (468 aa)
	fkbp10	Peptidylprolyl isomerase. (589 aa)
	p3h4	Prolyl 3-hydroxylase family member 4 (non-enzymatic). (428 aa)
	LOC103465933	Interferon induced transmembrane protein 5. (203 aa)
	p3h3	Prolyl 3-hydroxylase 3. (728 aa)
	ppib	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (216 aa)
	p3h2	Prolyl 3-hydroxylase 2. (659 aa)
	ppic	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (210 aa)
	p3h1	Prolyl 3-hydroxylase 1. (829 aa)
	col6a1	Collagen, type VI, alpha 1. (894 aa)
	LOC103481267	Peptidylprolyl isomerase. (568 aa)
	P3H4	Prolyl 3-hydroxylase family member 4 (non-enzymatic). (423 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103461657	LOC103476145	ENSPREP00000014264	ENSPREP00000015677	Uncharacterized protein.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	0.411
LOC103461657	col6a1	ENSPREP00000014264	ENSPREP00000031825	Uncharacterized protein.	Collagen, type VI, alpha 1.	0.929
LOC103461657	p3h1	ENSPREP00000014264	ENSPREP00000028900	Uncharacterized protein.	Prolyl 3-hydroxylase 1.	0.411
LOC103461657	p3h2	ENSPREP00000014264	ENSPREP00000022973	Uncharacterized protein.	Prolyl 3-hydroxylase 2.	0.411
LOC103461657	p3h3	ENSPREP00000014264	ENSPREP00000018471	Uncharacterized protein.	Prolyl 3-hydroxylase 3.	0.411
LOC103461657	ppib	ENSPREP00000014264	ENSPREP00000019567	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.485
LOC103461657	ppic	ENSPREP00000014264	ENSPREP00000027562	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.442
LOC103461657	serpinh1	ENSPREP00000014264	ENSPREP00000007961	Uncharacterized protein.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	0.411
LOC103465933	LOC103481267	ENSPREP00000018228	ENSPREP00000032961	Interferon induced transmembrane protein 5.	Peptidylprolyl isomerase.	0.481
LOC103465933	crtap	ENSPREP00000018228	ENSPREP00000008360	Interferon induced transmembrane protein 5.	Cartilage associated protein.	0.502
LOC103465933	fkbp10	ENSPREP00000018228	ENSPREP00000015885	Interferon induced transmembrane protein 5.	Peptidylprolyl isomerase.	0.407
LOC103465933	p3h1	ENSPREP00000018228	ENSPREP00000028900	Interferon induced transmembrane protein 5.	Prolyl 3-hydroxylase 1.	0.501
LOC103465933	serpinf1	ENSPREP00000018228	ENSPREP00000003312	Interferon induced transmembrane protein 5.	SERPIN domain-containing protein; Belongs to the serpin family.	0.614
LOC103476145	LOC103461657	ENSPREP00000015677	ENSPREP00000014264	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Uncharacterized protein.	0.411
LOC103476145	LOC103481267	ENSPREP00000015677	ENSPREP00000032961	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Peptidylprolyl isomerase.	0.520
LOC103476145	P3H4	ENSPREP00000015677	ENSPREP00000032981	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Prolyl 3-hydroxylase family member 4 (non-enzymatic).	0.455
LOC103476145	col6a1	ENSPREP00000015677	ENSPREP00000031825	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Collagen, type VI, alpha 1.	0.554
LOC103476145	crtap	ENSPREP00000015677	ENSPREP00000008360	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Cartilage associated protein.	0.455
LOC103476145	fkbp10	ENSPREP00000015677	ENSPREP00000015885	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Peptidylprolyl isomerase.	0.520
LOC103476145	p3h1	ENSPREP00000015677	ENSPREP00000028900	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Prolyl 3-hydroxylase 1.	0.414