STRINGSTRING
UBL5 UBL5 plrg1 plrg1 SART1 SART1 LOC103465396 LOC103465396 LOC103464681 LOC103464681 snrpa snrpa clg13h19orf54 clg13h19orf54 zmat2 zmat2 wdr53 wdr53 ppie ppie tfip11 tfip11 ppil1 ppil1 cdc40 cdc40 snrpa1 snrpa1 prpf19 prpf19 prpf4b prpf4b pqbp1 pqbp1 sf3b2 sf3b2 LOC103467951 LOC103467951 srrm1 srrm1 prpf38a prpf38a dhx36 dhx36 syf2 syf2 dhx29 dhx29 ENSPREP00000004346 ENSPREP00000004346 Rbmx2 Rbmx2 fam50a fam50a dhx16 dhx16 ik ik rbm22 rbm22 Cwc25 Cwc25 sf1 sf1 Snrpd2 Snrpd2 cwc22 cwc22 slu7 slu7 smu1 smu1 cdc5l cdc5l snrpb2 snrpb2 snrnp40 snrnp40 LOC103460651 LOC103460651 zcchc17 zcchc17 DDX41 DDX41 snrpg snrpg ddx46 ddx46 snrnp70 snrnp70 LSM8 LSM8 ppil3 ppil3 dhx40 dhx40 sde2 sde2 xab2 xab2 snip1 snip1 LOC103479086 LOC103479086 ddx23 ddx23 parpbp parpbp snrpd1 snrpd1 clg9h9orf78 clg9h9orf78 aqr aqr SMU1 SMU1 snrpd3 snrpd3 ddx59 ddx59 prpf31 prpf31 htatsf1 htatsf1 hfm1 hfm1 TCERG1 TCERG1 SRRM3 SRRM3 dhx33 dhx33 EFTUD2 EFTUD2 ENSPREP00000012415 ENSPREP00000012415 LOC103463642 LOC103463642 snrnp200 snrnp200 ZNF830 ZNF830 sf3b5 sf3b5 lsm1 lsm1 bcas2 bcas2 nsrp1 nsrp1 lsm10 lsm10 rnf113a rnf113a ddx42 ddx42 rnpc3 rnpc3 sf3a1 sf3a1 LOC103458447 LOC103458447 yju2 yju2 ctnnbl1 ctnnbl1 sf3b4 sf3b4 lsm4 lsm4 zcrb1 zcrb1 dhx8 dhx8 nkap nkap fam32a fam32a crnkl1 crnkl1 zmat5 zmat5 SNRPC SNRPC ppil2 ppil2 LOC103479278 LOC103479278 WDR70 WDR70 rbm41 rbm41 sf3a3 sf3a3 LOC103460347 LOC103460347 prpf18 prpf18 lrmda lrmda LOC103468401 LOC103468401 ENSPREP00000022980 ENSPREP00000022980 wbp11 wbp11 dhx34 dhx34 lsm2 lsm2 lsm7 lsm7 Prpf4 Prpf4 ppih ppih ENSPREP00000025430 ENSPREP00000025430 prpf3 prpf3 snrnp27 snrnp27 sf3a2 sf3a2 daw1 daw1 mfap1 mfap1 prpf6 prpf6 snrpe snrpe rbm42 rbm42 bud31 bud31 txnl4a txnl4a dhx35 dhx35 snw1 snw1 cwc27 cwc27 ppwd1 ppwd1 wbp4 wbp4 prkrip1 prkrip1 sf3b6 sf3b6 DDX5 DDX5 LOC103480693 LOC103480693 dhx9 dhx9 LOC103474478 LOC103474478 sf3b1 sf3b1 lsm11 lsm11 sf3b3 sf3b3 ncmap ncmap ENSPREP00000029432 ENSPREP00000029432 wdr25 wdr25 pprc1 pprc1 phf5a phf5a ccdc12 ccdc12 cwf19l2 cwf19l2 usp39 usp39 txnl4b txnl4b ENSPREP00000032354 ENSPREP00000032354 prpf8 prpf8 ENSPREP00000032360 ENSPREP00000032360 cwc15 cwc15 sart3 sart3 lsm5 lsm5 lsm3 lsm3 Snrpf Snrpf LOC103481307 LOC103481307 dhx38 dhx38 lsm6 lsm6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UBL5Ubiquitin like 5. (73 aa)
plrg1Pleiotropic regulator 1. (510 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (756 aa)
LOC103465396Si:dkey-93h22.8. (1053 aa)
LOC103464681DEAD-box helicase 17; Belongs to the DEAD box helicase family. (651 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (273 aa)
clg13h19orf54Zgc:153119. (295 aa)
zmat2Zinc finger, matrin-type 2. (204 aa)
wdr53WD repeat domain 53. (373 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (830 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (254 aa)
prpf19Pre-mRNA processing factor 19. (458 aa)
prpf4bPre-mRNA processing factor 4Bb. (984 aa)
pqbp1Polyglutamine binding protein 1. (153 aa)
sf3b2Splicing factor 3b, subunit 2. (853 aa)
LOC103467951G patch domain and KOW motifs. (323 aa)
srrm1Serine/arginine repetitive matrix 1. (839 aa)
prpf38aPre-mRNA processing factor 38A. (324 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1057 aa)
syf2SYF2 pre-mRNA-splicing factor. (238 aa)
dhx29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1373 aa)
ENSPREP00000004346Uncharacterized protein. (56 aa)
Rbmx2Uncharacterized protein. (221 aa)
fam50aFamily with sequence similarity 50 member A. (362 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1052 aa)
ikIK cytokine. (492 aa)
rbm22RNA binding motif protein 22. (426 aa)
Cwc25Cir_N domain-containing protein. (64 aa)
sf1Splicing factor 1. (676 aa)
Snrpd2Small nuclear ribonucleoprotein Sm D2. (115 aa)
cwc22CWC22 spliceosome associated protein homolog. (854 aa)
slu7SLU7 homolog, splicing factor. (560 aa)
smu1SMU1 DNA replication regulator and spliceosomal factor b. (511 aa)
cdc5lCDC5 cell division cycle 5-like (S. pombe). (809 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (243 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
LOC103460651Cwf21 domain-containing protein. (965 aa)
zcchc17Zinc finger, CCHC domain containing 17. (304 aa)
DDX41DEAD-box helicase 41. (614 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1071 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (466 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (111 aa)
ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (158 aa)
dhx40DEAH (Asp-Glu-Ala-His) box polypeptide 40. (740 aa)
sde2Uncharacterized protein. (276 aa)
xab2XPA binding protein 2. (912 aa)
snip1Smad nuclear interacting protein. (363 aa)
LOC103479086Uncharacterized protein. (366 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (805 aa)
parpbpPARP1 binding protein. (589 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
clg9h9orf78Zgc:103692. (293 aa)
aqrAquarius intron-binding spliceosomal factor. (1325 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (527 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (122 aa)
ddx59DEAD (Asp-Glu-Ala-Asp) box polypeptide 59. (672 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
htatsf1HIV-1 Tat specific factor 1. (444 aa)
hfm1Helicase for meiosis 1. (1062 aa)
TCERG1Transcription elongation regulator 1. (1056 aa)
SRRM3Serine/arginine repetitive matrix 3. (640 aa)
dhx33DEAH (Asp-Glu-Ala-His) box polypeptide 33. (682 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (389 aa)
ENSPREP00000012415EFG_C domain-containing protein. (178 aa)
LOC103463642Leucine rich repeat and Ig domain containing 3a. (610 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
ZNF830Zinc finger protein 830. (333 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
bcas2BCAS2 pre-mRNA processing factor. (243 aa)
nsrp1Nuclear speckle splicing regulatory protein 1. (477 aa)
lsm10LSM10, U7 small nuclear RNA associated. (131 aa)
rnf113aRing finger protein 113A. (323 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (941 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (506 aa)
sf3a1Splicing factor 3a, subunit 1. (786 aa)
LOC103458447Src homology 2 domain containing transforming protein D, a. (415 aa)
yju2YJU2 splicing factor homolog. (344 aa)
ctnnbl1Catenin, beta like 1. (534 aa)
sf3b4Splicing factor 3b, subunit 4. (403 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (188 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (206 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1258 aa)
nkapNFKB activating protein. (406 aa)
fam32aFamily with sequence similarity 32 member A. (114 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (749 aa)
zmat5Zinc finger, matrin-type 5. (175 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (180 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (525 aa)
LOC103479278Cactin. (851 aa)
WDR70WD repeat domain 70. (536 aa)
rbm41RNA binding motif protein 41. (440 aa)
sf3a3Splicing factor 3a, subunit 3. (502 aa)
LOC103460347ISY1 splicing factor homolog. (235 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
lrmdaLeucine rich melanocyte differentiation associated. (233 aa)
LOC103468401DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (636 aa)
ENSPREP00000022980Small nuclear ribonucleoprotein-associated protein. (217 aa)
wbp11WW domain binding protein 11. (696 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1137 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (93 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (130 aa)
Prpf4WD_REPEATS_REGION domain-containing protein. (184 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
ENSPREP00000025430BUD13 homolog. (482 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
snrnp27SNRNP27 domain-containing protein. (162 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
daw1WD_REPEATS_REGION domain-containing protein. (415 aa)
mfap1Microfibril associated protein 1. (441 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (1016 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
rbm42RNA binding motif protein 42. (398 aa)
bud31BUD31 homolog. (103 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
dhx35DEAH-box helicase 35. (699 aa)
snw1SNW domain containing 1. (536 aa)
cwc27CWC27 spliceosome associated cyclophilin. (455 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (632 aa)
wbp4Uncharacterized protein. (433 aa)
prkrip1PRKR interacting protein 1. (191 aa)
sf3b6Splicing factor 3b, subunit 6. (231 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (636 aa)
LOC103480693DEAH (Asp-Glu-Ala-His) box helicase 15. (729 aa)
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1216 aa)
LOC103474478Leucine rich repeat containing 51. (194 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
lsm11LSM11, U7 small nuclear RNA associated. (339 aa)
sf3b3Splicing factor 3b, subunit 3. (1014 aa)
ncmapUncharacterized protein. (129 aa)
ENSPREP00000029432Uncharacterized protein. (223 aa)
wdr25WD_REPEATS_REGION domain-containing protein. (228 aa)
pprc1PPARG related coactivator 1. (1131 aa)
phf5aPHD finger protein 5A. (110 aa)
ccdc12Coiled-coil domain containing 12. (202 aa)
cwf19l2CWF19 like cell cycle control factor 2. (774 aa)
usp39Ubiquitin specific peptidase 39. (495 aa)
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
ENSPREP00000032354Ig-like domain-containing protein. (184 aa)
prpf8Pre-mRNA processing factor 8. (2358 aa)
ENSPREP00000032360Ig-like domain-containing protein. (169 aa)
cwc15CWC15 spliceosome associated protein homolog. (238 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (947 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (62 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (87 aa)
LOC103481307Uncharacterized protein. (183 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1229 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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