(17 nodes) Mixed, incl. BBSome, and Skeletal muscle fiber differentiation network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPREP00000000384	BBSome interacting protein 1. (62 aa)
	bbs1	Bardet-Biedl syndrome 1. (583 aa)
	lztfl1	Leucine zipper transcription factor-like 1. (305 aa)
	bbs5	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family. (343 aa)
	klhl41	Kelch-like family member 41a. (598 aa)
	bbs4	Bardet-Biedl syndrome 4. (520 aa)
	bbs7	Bardet-Biedl syndrome 7. (712 aa)
	ttc8	Tetratricopeptide repeat domain 8. (513 aa)
	LOC103474384	Kelch-like family member 41b. (606 aa)
	ENSPREP00000022956	AMP-binding domain-containing protein. (337 aa)
	bbs2	Bardet-Biedl syndrome 2. (656 aa)
	LOC103462053	Solute carrier family 27 member 2a. (615 aa)
	LOC103462052	Uncharacterized protein. (621 aa)
	bbs9	Bardet-Biedl syndrome 9. (992 aa)
	klhl40	Kelch-like family member 40b. (612 aa)
	LOC103478606	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (921 aa)
	LOC103478865	Kelch-like family member 40a. (613 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000000384	ENSPREP00000022956	ENSPREP00000000384	ENSPREP00000022956	BBSome interacting protein 1.	AMP-binding domain-containing protein.	0.429
ENSPREP00000000384	LOC103462052	ENSPREP00000000384	ENSPREP00000027970	BBSome interacting protein 1.	Uncharacterized protein.	0.429
ENSPREP00000000384	LOC103462053	ENSPREP00000000384	ENSPREP00000027925	BBSome interacting protein 1.	Solute carrier family 27 member 2a.	0.429
ENSPREP00000000384	LOC103478606	ENSPREP00000000384	ENSPREP00000030946	BBSome interacting protein 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.660
ENSPREP00000000384	bbs1	ENSPREP00000000384	ENSPREP00000001676	BBSome interacting protein 1.	Bardet-Biedl syndrome 1.	0.889
ENSPREP00000000384	bbs2	ENSPREP00000000384	ENSPREP00000027632	BBSome interacting protein 1.	Bardet-Biedl syndrome 2.	0.831
ENSPREP00000000384	bbs4	ENSPREP00000000384	ENSPREP00000009421	BBSome interacting protein 1.	Bardet-Biedl syndrome 4.	0.556
ENSPREP00000000384	bbs5	ENSPREP00000000384	ENSPREP00000004692	BBSome interacting protein 1.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.798
ENSPREP00000000384	bbs7	ENSPREP00000000384	ENSPREP00000010413	BBSome interacting protein 1.	Bardet-Biedl syndrome 7.	0.890
ENSPREP00000000384	bbs9	ENSPREP00000000384	ENSPREP00000028422	BBSome interacting protein 1.	Bardet-Biedl syndrome 9.	0.881
ENSPREP00000000384	ttc8	ENSPREP00000000384	ENSPREP00000014316	BBSome interacting protein 1.	Tetratricopeptide repeat domain 8.	0.909
ENSPREP00000022956	ENSPREP00000000384	ENSPREP00000022956	ENSPREP00000000384	AMP-binding domain-containing protein.	BBSome interacting protein 1.	0.429
ENSPREP00000022956	LOC103462052	ENSPREP00000022956	ENSPREP00000027970	AMP-binding domain-containing protein.	Uncharacterized protein.	0.903
ENSPREP00000022956	LOC103462053	ENSPREP00000022956	ENSPREP00000027925	AMP-binding domain-containing protein.	Solute carrier family 27 member 2a.	0.918
ENSPREP00000022956	LOC103478606	ENSPREP00000022956	ENSPREP00000030946	AMP-binding domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.631
ENSPREP00000022956	bbs1	ENSPREP00000022956	ENSPREP00000001676	AMP-binding domain-containing protein.	Bardet-Biedl syndrome 1.	0.808
ENSPREP00000022956	bbs4	ENSPREP00000022956	ENSPREP00000009421	AMP-binding domain-containing protein.	Bardet-Biedl syndrome 4.	0.773
ENSPREP00000022956	bbs7	ENSPREP00000022956	ENSPREP00000010413	AMP-binding domain-containing protein.	Bardet-Biedl syndrome 7.	0.808
ENSPREP00000022956	bbs9	ENSPREP00000022956	ENSPREP00000028422	AMP-binding domain-containing protein.	Bardet-Biedl syndrome 9.	0.807
ENSPREP00000022956	lztfl1	ENSPREP00000022956	ENSPREP00000003652	AMP-binding domain-containing protein.	Leucine zipper transcription factor-like 1.	0.602