(8 nodes) Protein de-ADP-ribosylation, and Helix-loop-helix protein TAL-like network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103470788	NAD(P)(+)--arginine ADP-ribosyltransferase. (264 aa)
	adprhl2	ADP-ribosylhydrolase like 2. (383 aa)
	ENSPREP00000009110	Macro domain-containing protein. (171 aa)
	LOC103476645	Nescient helix loop helix 2. (124 aa)
	ENSPREP00000010060	Uncharacterized protein. (139 aa)
	macrod1	Mono-ADP ribosylhydrolase 1. (366 aa)
	ENSPREP00000025112	Macro domain-containing protein. (173 aa)
	gdap2	Ganglioside induced differentiation associated protein 2. (496 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000009110	adprhl2	ENSPREP00000009110	ENSPREP00000008081	Macro domain-containing protein.	ADP-ribosylhydrolase like 2.	0.469
ENSPREP00000025112	adprhl2	ENSPREP00000025112	ENSPREP00000008081	Macro domain-containing protein.	ADP-ribosylhydrolase like 2.	0.469
LOC103476645	gdap2	ENSPREP00000009781	ENSPREP00000028766	Nescient helix loop helix 2.	Ganglioside induced differentiation associated protein 2.	0.475
adprhl2	ENSPREP00000009110	ENSPREP00000008081	ENSPREP00000009110	ADP-ribosylhydrolase like 2.	Macro domain-containing protein.	0.469
adprhl2	ENSPREP00000025112	ENSPREP00000008081	ENSPREP00000025112	ADP-ribosylhydrolase like 2.	Macro domain-containing protein.	0.469
gdap2	LOC103476645	ENSPREP00000028766	ENSPREP00000009781	Ganglioside induced differentiation associated protein 2.	Nescient helix loop helix 2.	0.475