(30 nodes) Mixed, incl. Homeo-prospero domain, and Forkhead box protein P1/P2, forkhead domain network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prox1	Prospero homeobox 1a. (818 aa)
	LOC103478554	Sp8 transcription factor b. (454 aa)
	LOC103474697	Purinergic receptor P2Y13; Belongs to the G-protein coupled receptor 1 family. (382 aa)
	LOC103465669	Link domain-containing protein. (438 aa)
	LOC103464879	Fork-head domain-containing protein. (398 aa)
	ENSPREP00000005118	Uncharacterized protein. (115 aa)
	LOC103462202	Uncharacterized protein. (435 aa)
	LOC103467660	Fork-head domain-containing protein. (579 aa)
	nr2f2	Nuclear receptor subfamily 2, group F, member 2. (266 aa)
	KCTD15	Potassium channel tetramerization domain containing 15. (257 aa)
	LOC103459056	Prospero homeobox 2. (632 aa)
	foxp2	Forkhead box P2. (759 aa)
	LOC103476184	Interferon regulatory factor 2 binding protein 1. (589 aa)
	ranbp3	RAN binding protein 3b. (519 aa)
	esrrg	Estrogen-related receptor gamma b. (341 aa)
	LOC103465927	Fork-head domain-containing protein. (542 aa)
	xpo7	Exportin 7. (1119 aa)
	znf236	Zinc finger protein 236. (1862 aa)
	ETV6	ETS variant 6. (472 aa)
	LOC103473252	Prospero domain-containing protein. (884 aa)
	ccbe1	Collagen and calcium binding EGF domains 1. (397 aa)
	ENSPREP00000028043	Interferon regulatory factor 2 binding protein 1. (417 aa)
	capn15	Calpain 15; Belongs to the peptidase C2 family. (1090 aa)
	LOC103467917	Uncharacterized protein. (577 aa)
	LOC103457650	Prospero homeobox 2. (491 aa)
	LOC103467427	Ets variant 7. (407 aa)
	LOC103480736	Prospero homeobox 3. (727 aa)
	csmd2	CUB and Sushi multiple domains 2. (3574 aa)
	foxn4	Forkhead box N4. (500 aa)
	ENSPREP00000034115	Link domain-containing protein. (213 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000028043	KCTD15	ENSPREP00000028043	ENSPREP00000011369	Interferon regulatory factor 2 binding protein 1.	Potassium channel tetramerization domain containing 15.	0.649
ENSPREP00000034115	LOC103457650	ENSPREP00000034115	ENSPREP00000028954	Link domain-containing protein.	Prospero homeobox 2.	0.474
ENSPREP00000034115	LOC103459056	ENSPREP00000034115	ENSPREP00000013739	Link domain-containing protein.	Prospero homeobox 2.	0.473
ENSPREP00000034115	LOC103462202	ENSPREP00000034115	ENSPREP00000005758	Link domain-containing protein.	Uncharacterized protein.	0.501
ENSPREP00000034115	LOC103467917	ENSPREP00000034115	ENSPREP00000028792	Link domain-containing protein.	Uncharacterized protein.	0.439
ENSPREP00000034115	LOC103480736	ENSPREP00000034115	ENSPREP00000029770	Link domain-containing protein.	Prospero homeobox 3.	0.472
ENSPREP00000034115	prox1	ENSPREP00000034115	ENSPREP00000001002	Link domain-containing protein.	Prospero homeobox 1a.	0.400
ETV6	LOC103478554	ENSPREP00000023902	ENSPREP00000002860	ETS variant 6.	Sp8 transcription factor b.	0.496
ETV6	esrrg	ENSPREP00000023902	ENSPREP00000017657	ETS variant 6.	Estrogen-related receptor gamma b.	0.413
ETV6	foxp2	ENSPREP00000023902	ENSPREP00000015997	ETS variant 6.	Forkhead box P2.	0.425
KCTD15	ENSPREP00000028043	ENSPREP00000011369	ENSPREP00000028043	Potassium channel tetramerization domain containing 15.	Interferon regulatory factor 2 binding protein 1.	0.649
KCTD15	LOC103476184	ENSPREP00000011369	ENSPREP00000017284	Potassium channel tetramerization domain containing 15.	Interferon regulatory factor 2 binding protein 1.	0.649
KCTD15	csmd2	ENSPREP00000011369	ENSPREP00000030241	Potassium channel tetramerization domain containing 15.	CUB and Sushi multiple domains 2.	0.681
LOC103457650	ENSPREP00000034115	ENSPREP00000028954	ENSPREP00000034115	Prospero homeobox 2.	Link domain-containing protein.	0.474
LOC103457650	LOC103462202	ENSPREP00000028954	ENSPREP00000005758	Prospero homeobox 2.	Uncharacterized protein.	0.561
LOC103459056	ENSPREP00000034115	ENSPREP00000013739	ENSPREP00000034115	Prospero homeobox 2.	Link domain-containing protein.	0.473
LOC103462202	ENSPREP00000034115	ENSPREP00000005758	ENSPREP00000034115	Uncharacterized protein.	Link domain-containing protein.	0.501
LOC103462202	LOC103457650	ENSPREP00000005758	ENSPREP00000028954	Uncharacterized protein.	Prospero homeobox 2.	0.561
LOC103462202	LOC103480736	ENSPREP00000005758	ENSPREP00000029770	Uncharacterized protein.	Prospero homeobox 3.	0.557
LOC103465669	LOC103467917	ENSPREP00000004502	ENSPREP00000028792	Link domain-containing protein.	Uncharacterized protein.	0.551