(5 nodes) Mixed, incl. Synaptonemal complex protein 2-like, and TMC domain network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TMC6	Transmembrane channel-like protein. (717 aa)
	ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1. (459 aa)
	tcte1	T-complex-associated-testis-expressed 1. (487 aa)
	sycp2	Uncharacterized protein. (1567 aa)
	sycp3	Synaptonemal complex protein 3. (245 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TMC6	sycp3	ENSPREP00000000581	ENSPREP00000029907	Transmembrane channel-like protein.	Synaptonemal complex protein 3.	0.626
TMC6	tcte1	ENSPREP00000000581	ENSPREP00000012348	Transmembrane channel-like protein.	T-complex-associated-testis-expressed 1.	0.675
ogfod1	sycp3	ENSPREP00000001816	ENSPREP00000029907	2-oxoglutarate and iron-dependent oxygenase domain containing 1.	Synaptonemal complex protein 3.	0.944
sycp2	sycp3	ENSPREP00000028690	ENSPREP00000029907	Uncharacterized protein.	Synaptonemal complex protein 3.	0.541
sycp3	TMC6	ENSPREP00000029907	ENSPREP00000000581	Synaptonemal complex protein 3.	Transmembrane channel-like protein.	0.626
sycp3	ogfod1	ENSPREP00000029907	ENSPREP00000001816	Synaptonemal complex protein 3.	2-oxoglutarate and iron-dependent oxygenase domain containing 1.	0.944
sycp3	sycp2	ENSPREP00000029907	ENSPREP00000028690	Synaptonemal complex protein 3.	Uncharacterized protein.	0.541
sycp3	tcte1	ENSPREP00000029907	ENSPREP00000012348	Synaptonemal complex protein 3.	T-complex-associated-testis-expressed 1.	0.493
tcte1	TMC6	ENSPREP00000012348	ENSPREP00000000581	T-complex-associated-testis-expressed 1.	Transmembrane channel-like protein.	0.675
tcte1	sycp3	ENSPREP00000012348	ENSPREP00000029907	T-complex-associated-testis-expressed 1.	Synaptonemal complex protein 3.	0.493