(19 nodes) Mixed, incl. uDENN domain, and ArfGAP ACAP1/2/3-like network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103474897	Si:dkey-76b14.2. (896 aa)
	LOC103460653	Si:dkey-16l2.16. (209 aa)
	dennd2d	DENN/MADD domain containing 2Da. (584 aa)
	acap2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2. (858 aa)
	LOC103460059	Zgc:162872. (662 aa)
	ENSPREP00000012866	Trafficking regulator of GLUT4 (SLC2A4) 1b. (190 aa)
	LOC103459495	UDENN domain-containing protein. (1094 aa)
	tbc1d10b	TBC1 domain family, member 10b. (817 aa)
	LOC103470602	TBC1 domain family, member 10Aa. (479 aa)
	tbc1d10a	TBC1 domain family, member 10Ab. (471 aa)
	dennd2c	DENN/MADD domain containing 2C. (939 aa)
	dennd1a	DENN/MADD domain containing 1A. (996 aa)
	dennd1b	DENN/MADD domain containing 1B. (864 aa)
	rab35	RAB35, member RAS oncogene family b. (184 aa)
	LOC103467877	Uncharacterized protein. (525 aa)
	tbc1d10c	Rab-GAP TBC domain-containing protein. (542 aa)
	tbc1d24	TBC1 domain family, member 24. (568 aa)
	LOC103462435	Nucleobindin 2a. (494 aa)
	dennd2b	Suppression of tumorigenicity 5. (1110 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103459495	LOC103460653	ENSPREP00000013871	ENSPREP00000007773	UDENN domain-containing protein.	Si:dkey-16l2.16.	0.690
LOC103459495	rab35	ENSPREP00000013871	ENSPREP00000023082	UDENN domain-containing protein.	RAB35, member RAS oncogene family b.	0.690
LOC103460059	LOC103460653	ENSPREP00000010716	ENSPREP00000007773	Zgc:162872.	Si:dkey-16l2.16.	0.557
LOC103460059	rab35	ENSPREP00000010716	ENSPREP00000023082	Zgc:162872.	RAB35, member RAS oncogene family b.	0.557
LOC103460653	LOC103459495	ENSPREP00000007773	ENSPREP00000013871	Si:dkey-16l2.16.	UDENN domain-containing protein.	0.690
LOC103460653	LOC103460059	ENSPREP00000007773	ENSPREP00000010716	Si:dkey-16l2.16.	Zgc:162872.	0.557
LOC103460653	LOC103467877	ENSPREP00000007773	ENSPREP00000024765	Si:dkey-16l2.16.	Uncharacterized protein.	0.598
LOC103460653	LOC103470602	ENSPREP00000007773	ENSPREP00000015492	Si:dkey-16l2.16.	TBC1 domain family, member 10Aa.	0.664
LOC103460653	LOC103474897	ENSPREP00000007773	ENSPREP00000000462	Si:dkey-16l2.16.	Si:dkey-76b14.2.	0.823
LOC103460653	acap2	ENSPREP00000007773	ENSPREP00000009878	Si:dkey-16l2.16.	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2.	0.557
LOC103460653	dennd1a	ENSPREP00000007773	ENSPREP00000017577	Si:dkey-16l2.16.	DENN/MADD domain containing 1A.	0.929
LOC103460653	dennd1b	ENSPREP00000007773	ENSPREP00000018159	Si:dkey-16l2.16.	DENN/MADD domain containing 1B.	0.823
LOC103460653	dennd2b	ENSPREP00000007773	ENSPREP00000034056	Si:dkey-16l2.16.	Suppression of tumorigenicity 5.	0.690
LOC103460653	dennd2c	ENSPREP00000007773	ENSPREP00000016963	Si:dkey-16l2.16.	DENN/MADD domain containing 2C.	0.690
LOC103460653	dennd2d	ENSPREP00000007773	ENSPREP00000009171	Si:dkey-16l2.16.	DENN/MADD domain containing 2Da.	0.690
LOC103460653	tbc1d10a	ENSPREP00000007773	ENSPREP00000016091	Si:dkey-16l2.16.	TBC1 domain family, member 10Ab.	0.664
LOC103460653	tbc1d10b	ENSPREP00000007773	ENSPREP00000015153	Si:dkey-16l2.16.	TBC1 domain family, member 10b.	0.664
LOC103460653	tbc1d10c	ENSPREP00000007773	ENSPREP00000025869	Si:dkey-16l2.16.	Rab-GAP TBC domain-containing protein.	0.539
LOC103460653	tbc1d24	ENSPREP00000007773	ENSPREP00000027961	Si:dkey-16l2.16.	TBC1 domain family, member 24.	0.598
LOC103467877	LOC103460653	ENSPREP00000024765	ENSPREP00000007773	Uncharacterized protein.	Si:dkey-16l2.16.	0.598