(11 nodes) Mixed, incl. DENN domain-containing protein 1A/1B/1C, and Domain in TBC and LysM domain containing proteins network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103474897	Si:dkey-76b14.2. (896 aa)
	LOC103460653	Si:dkey-16l2.16. (209 aa)
	tbc1d10b	TBC1 domain family, member 10b. (817 aa)
	LOC103470602	TBC1 domain family, member 10Aa. (479 aa)
	tbc1d10a	TBC1 domain family, member 10Ab. (471 aa)
	dennd2c	DENN/MADD domain containing 2C. (939 aa)
	dennd1a	DENN/MADD domain containing 1A. (996 aa)
	dennd1b	DENN/MADD domain containing 1B. (864 aa)
	rab35	RAB35, member RAS oncogene family b. (184 aa)
	LOC103467877	Uncharacterized protein. (525 aa)
	tbc1d24	TBC1 domain family, member 24. (568 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103460653	LOC103467877	ENSPREP00000007773	ENSPREP00000024765	Si:dkey-16l2.16.	Uncharacterized protein.	0.598
LOC103460653	LOC103470602	ENSPREP00000007773	ENSPREP00000015492	Si:dkey-16l2.16.	TBC1 domain family, member 10Aa.	0.664
LOC103460653	LOC103474897	ENSPREP00000007773	ENSPREP00000000462	Si:dkey-16l2.16.	Si:dkey-76b14.2.	0.823
LOC103460653	dennd1a	ENSPREP00000007773	ENSPREP00000017577	Si:dkey-16l2.16.	DENN/MADD domain containing 1A.	0.929
LOC103460653	dennd1b	ENSPREP00000007773	ENSPREP00000018159	Si:dkey-16l2.16.	DENN/MADD domain containing 1B.	0.823
LOC103460653	dennd2c	ENSPREP00000007773	ENSPREP00000016963	Si:dkey-16l2.16.	DENN/MADD domain containing 2C.	0.690
LOC103460653	tbc1d10a	ENSPREP00000007773	ENSPREP00000016091	Si:dkey-16l2.16.	TBC1 domain family, member 10Ab.	0.664
LOC103460653	tbc1d10b	ENSPREP00000007773	ENSPREP00000015153	Si:dkey-16l2.16.	TBC1 domain family, member 10b.	0.664
LOC103460653	tbc1d24	ENSPREP00000007773	ENSPREP00000027961	Si:dkey-16l2.16.	TBC1 domain family, member 24.	0.598
LOC103467877	LOC103460653	ENSPREP00000024765	ENSPREP00000007773	Uncharacterized protein.	Si:dkey-16l2.16.	0.598
LOC103467877	rab35	ENSPREP00000024765	ENSPREP00000023082	Uncharacterized protein.	RAB35, member RAS oncogene family b.	0.598
LOC103470602	LOC103460653	ENSPREP00000015492	ENSPREP00000007773	TBC1 domain family, member 10Aa.	Si:dkey-16l2.16.	0.664
LOC103470602	rab35	ENSPREP00000015492	ENSPREP00000023082	TBC1 domain family, member 10Aa.	RAB35, member RAS oncogene family b.	0.664
LOC103474897	LOC103460653	ENSPREP00000000462	ENSPREP00000007773	Si:dkey-76b14.2.	Si:dkey-16l2.16.	0.823
LOC103474897	dennd1a	ENSPREP00000000462	ENSPREP00000017577	Si:dkey-76b14.2.	DENN/MADD domain containing 1A.	0.635
LOC103474897	rab35	ENSPREP00000000462	ENSPREP00000023082	Si:dkey-76b14.2.	RAB35, member RAS oncogene family b.	0.823
dennd1a	LOC103460653	ENSPREP00000017577	ENSPREP00000007773	DENN/MADD domain containing 1A.	Si:dkey-16l2.16.	0.929
dennd1a	LOC103474897	ENSPREP00000017577	ENSPREP00000000462	DENN/MADD domain containing 1A.	Si:dkey-76b14.2.	0.635
dennd1a	dennd1b	ENSPREP00000017577	ENSPREP00000018159	DENN/MADD domain containing 1A.	DENN/MADD domain containing 1B.	0.634
dennd1a	rab35	ENSPREP00000017577	ENSPREP00000023082	DENN/MADD domain containing 1A.	RAB35, member RAS oncogene family b.	0.929