(7 nodes) Pyroptosis, and Dipeptidyl peptidase 8 /9 ,N-terminal network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103462404	Uncharacterized protein. (441 aa)
	dpp9	Dipeptidyl peptidase 9; Belongs to the peptidase S9B family. (860 aa)
	LOC103463346	Uncharacterized protein; Belongs to the peptidase S9B family. (891 aa)
	ENSPREP00000026504	Uncharacterized protein. (357 aa)
	ENSPREP00000030231	Uncharacterized protein. (800 aa)
	ENSPREP00000030263	Uncharacterized protein. (812 aa)
	ENSPREP00000030269	Uncharacterized protein. (785 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000030231	LOC103463346	ENSPREP00000030231	ENSPREP00000016367	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S9B family.	0.480
ENSPREP00000030231	dpp9	ENSPREP00000030231	ENSPREP00000013005	Uncharacterized protein.	Dipeptidyl peptidase 9; Belongs to the peptidase S9B family.	0.480
ENSPREP00000030263	LOC103463346	ENSPREP00000030263	ENSPREP00000016367	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S9B family.	0.480
ENSPREP00000030263	dpp9	ENSPREP00000030263	ENSPREP00000013005	Uncharacterized protein.	Dipeptidyl peptidase 9; Belongs to the peptidase S9B family.	0.480
ENSPREP00000030269	LOC103463346	ENSPREP00000030269	ENSPREP00000016367	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S9B family.	0.480
ENSPREP00000030269	dpp9	ENSPREP00000030269	ENSPREP00000013005	Uncharacterized protein.	Dipeptidyl peptidase 9; Belongs to the peptidase S9B family.	0.480
LOC103463346	ENSPREP00000030231	ENSPREP00000016367	ENSPREP00000030231	Uncharacterized protein; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.480
LOC103463346	ENSPREP00000030263	ENSPREP00000016367	ENSPREP00000030263	Uncharacterized protein; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.480
LOC103463346	ENSPREP00000030269	ENSPREP00000016367	ENSPREP00000030269	Uncharacterized protein; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.480
dpp9	ENSPREP00000030231	ENSPREP00000013005	ENSPREP00000030231	Dipeptidyl peptidase 9; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.480
dpp9	ENSPREP00000030263	ENSPREP00000013005	ENSPREP00000030263	Dipeptidyl peptidase 9; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.480
dpp9	ENSPREP00000030269	ENSPREP00000013005	ENSPREP00000030269	Dipeptidyl peptidase 9; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.480