23 items (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vps37a	VPS37A subunit of ESCRT-I. (394 aa)
	mvb12a	Uncharacterized protein. (258 aa)
	chmp7	Charged multivesicular body protein 7. (492 aa)
	LOC103468028	Charged multivesicular body protein 4Bb. (221 aa)
	LOC103468818	Charged multivesicular body protein 6a. (207 aa)
	pdcd6ip	Programmed cell death 6 interacting protein. (878 aa)
	vps28	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (210 aa)
	chmp4c	Charged multivesicular body protein 4C. (242 aa)
	vps25	Vacuolar protein sorting 25 homolog. (174 aa)
	LOC103470619	Multivesicular body subunit 12Bb. (244 aa)
	mvb12b	Multivesicular body subunit 12Ba. (315 aa)
	snf8	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (258 aa)
	chmp2a	Charged multivesicular body protein 2A. (262 aa)
	LOC103476297	Si:ch211-284f22.3. (298 aa)
	vps36	Vacuolar protein sorting 36 homolog. (382 aa)
	chmp3	Charged multivesicular body protein 3. (221 aa)
	chmp6	Charged multivesicular body protein 6. (207 aa)
	vps37b	Zgc:114173. (284 aa)
	LOC103466144	Zgc:123278. (130 aa)
	tsg101	Tumor susceptibility 101a. (390 aa)
	LOC103466155	UEV domain-containing protein. (471 aa)
	LOC103464227	Uncharacterized protein. (253 aa)
	LOC103470412	VPS37C subunit of ESCRT-I. (360 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103464227	LOC103466144	ENSPREP00000030757	ENSPREP00000028587	Uncharacterized protein.	Zgc:123278.	0.654
LOC103464227	LOC103466155	ENSPREP00000030757	ENSPREP00000029242	Uncharacterized protein.	UEV domain-containing protein.	0.598
LOC103464227	LOC103468028	ENSPREP00000030757	ENSPREP00000001515	Uncharacterized protein.	Charged multivesicular body protein 4Bb.	0.901
LOC103464227	LOC103468818	ENSPREP00000030757	ENSPREP00000004826	Uncharacterized protein.	Charged multivesicular body protein 6a.	0.861
LOC103464227	LOC103470412	ENSPREP00000030757	ENSPREP00000032362	Uncharacterized protein.	VPS37C subunit of ESCRT-I.	0.541
LOC103464227	LOC103470619	ENSPREP00000030757	ENSPREP00000016917	Uncharacterized protein.	Multivesicular body subunit 12Bb.	0.550
LOC103464227	LOC103476297	ENSPREP00000030757	ENSPREP00000021629	Uncharacterized protein.	Si:ch211-284f22.3.	0.508
LOC103464227	chmp2a	ENSPREP00000030757	ENSPREP00000019506	Uncharacterized protein.	Charged multivesicular body protein 2A.	0.949
LOC103464227	chmp3	ENSPREP00000030757	ENSPREP00000021883	Uncharacterized protein.	Charged multivesicular body protein 3.	0.958
LOC103464227	chmp4c	ENSPREP00000030757	ENSPREP00000012293	Uncharacterized protein.	Charged multivesicular body protein 4C.	0.911
LOC103464227	chmp6	ENSPREP00000030757	ENSPREP00000022155	Uncharacterized protein.	Charged multivesicular body protein 6.	0.861
LOC103464227	chmp7	ENSPREP00000030757	ENSPREP00000001098	Uncharacterized protein.	Charged multivesicular body protein 7.	0.982
LOC103464227	mvb12a	ENSPREP00000030757	ENSPREP00000000413	Uncharacterized protein.	Uncharacterized protein.	0.499
LOC103464227	mvb12b	ENSPREP00000030757	ENSPREP00000017353	Uncharacterized protein.	Multivesicular body subunit 12Ba.	0.550
LOC103464227	pdcd6ip	ENSPREP00000030757	ENSPREP00000007944	Uncharacterized protein.	Programmed cell death 6 interacting protein.	0.988
LOC103464227	snf8	ENSPREP00000030757	ENSPREP00000019438	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.880
LOC103464227	tsg101	ENSPREP00000030757	ENSPREP00000028752	Uncharacterized protein.	Tumor susceptibility 101a.	0.654
LOC103464227	vps25	ENSPREP00000030757	ENSPREP00000016011	Uncharacterized protein.	Vacuolar protein sorting 25 homolog.	0.856
LOC103464227	vps28	ENSPREP00000030757	ENSPREP00000010778	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.759
LOC103464227	vps36	ENSPREP00000030757	ENSPREP00000021730	Uncharacterized protein.	Vacuolar protein sorting 36 homolog.	0.823