(16 nodes) Mixed, incl. ISWI-type complex, and ATP-dependent chromatin remodeler activity network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	baz1a	Bromodomain adjacent to zinc finger domain, 1A. (1068 aa)
	ENSPREP00000009478	DUF4208 domain-containing protein. (509 aa)
	ENSPREP00000009552	Uncharacterized protein. (331 aa)
	ENSPREP00000009577	Uncharacterized protein. (393 aa)
	Baz2a	Uncharacterized protein. (258 aa)
	ENSPREP00000010584	WSD domain-containing protein. (176 aa)
	ENSPREP00000010594	Bromo domain-containing protein. (107 aa)
	chrac1	Chromatin accessibility complex subunit 1. (119 aa)
	ENSPREP00000012054	Uncharacterized protein. (423 aa)
	ENSPREP00000021383	GUCT domain-containing protein. (129 aa)
	dek	DEK_C domain-containing protein. (401 aa)
	mybbp1a	MYB binding protein (P160) 1a. (1240 aa)
	chd1l	Chromodomain helicase DNA binding protein 1-like. (867 aa)
	baz1b	Bromodomain adjacent to zinc finger domain, 1B. (1647 aa)
	hells	Helicase, lymphoid specific. (854 aa)
	smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1037 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Baz2a	ENSPREP00000009478	ENSPREP00000010569	ENSPREP00000009478	Uncharacterized protein.	DUF4208 domain-containing protein.	0.437
Baz2a	ENSPREP00000009552	ENSPREP00000010569	ENSPREP00000009552	Uncharacterized protein.	Uncharacterized protein.	0.437
Baz2a	ENSPREP00000009577	ENSPREP00000010569	ENSPREP00000009577	Uncharacterized protein.	Uncharacterized protein.	0.437
Baz2a	ENSPREP00000010584	ENSPREP00000010569	ENSPREP00000010584	Uncharacterized protein.	WSD domain-containing protein.	0.922
Baz2a	ENSPREP00000010594	ENSPREP00000010569	ENSPREP00000010594	Uncharacterized protein.	Bromo domain-containing protein.	0.899
Baz2a	ENSPREP00000012054	ENSPREP00000010569	ENSPREP00000012054	Uncharacterized protein.	Uncharacterized protein.	0.740
Baz2a	chd1l	ENSPREP00000010569	ENSPREP00000026478	Uncharacterized protein.	Chromodomain helicase DNA binding protein 1-like.	0.709
Baz2a	dek	ENSPREP00000010569	ENSPREP00000022622	Uncharacterized protein.	DEK_C domain-containing protein.	0.554
Baz2a	hells	ENSPREP00000010569	ENSPREP00000030052	Uncharacterized protein.	Helicase, lymphoid specific.	0.709
Baz2a	mybbp1a	ENSPREP00000010569	ENSPREP00000025192	Uncharacterized protein.	MYB binding protein (P160) 1a.	0.558
Baz2a	smarca5	ENSPREP00000010569	ENSPREP00000034336	Uncharacterized protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.764
ENSPREP00000009478	Baz2a	ENSPREP00000009478	ENSPREP00000010569	DUF4208 domain-containing protein.	Uncharacterized protein.	0.437
ENSPREP00000009478	ENSPREP00000009552	ENSPREP00000009478	ENSPREP00000009552	DUF4208 domain-containing protein.	Uncharacterized protein.	0.899
ENSPREP00000009478	ENSPREP00000009577	ENSPREP00000009478	ENSPREP00000009577	DUF4208 domain-containing protein.	Uncharacterized protein.	0.900
ENSPREP00000009478	ENSPREP00000010584	ENSPREP00000009478	ENSPREP00000010584	DUF4208 domain-containing protein.	WSD domain-containing protein.	0.437
ENSPREP00000009478	ENSPREP00000010594	ENSPREP00000009478	ENSPREP00000010594	DUF4208 domain-containing protein.	Bromo domain-containing protein.	0.437
ENSPREP00000009478	ENSPREP00000012054	ENSPREP00000009478	ENSPREP00000012054	DUF4208 domain-containing protein.	Uncharacterized protein.	0.437
ENSPREP00000009478	baz1a	ENSPREP00000009478	ENSPREP00000005317	DUF4208 domain-containing protein.	Bromodomain adjacent to zinc finger domain, 1A.	0.544
ENSPREP00000009478	baz1b	ENSPREP00000009478	ENSPREP00000027255	DUF4208 domain-containing protein.	Bromodomain adjacent to zinc finger domain, 1B.	0.440
ENSPREP00000009478	chd1l	ENSPREP00000009478	ENSPREP00000026478	DUF4208 domain-containing protein.	Chromodomain helicase DNA binding protein 1-like.	0.842