(70 nodes) Transcription coregulator binding network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPREP00000019608	ANK_REP_REGION domain-containing protein. (97 aa)
	LOC103464091	CREB binding protein a. (2371 aa)
	LOC103464523	Si:dkey-217d24.6. (782 aa)
	ehmt2	Euchromatic histone-lysine N-methyltransferase 2. (1154 aa)
	lef1	Lymphoid enhancer-binding factor 1. (422 aa)
	LOC103475931	SIX homeobox 7. (260 aa)
	LOC103479643	Period circadian clock 2. (1451 aa)
	per3	Period circadian clock 3. (1280 aa)
	LOC103468820	BAI1-associated protein 2a. (549 aa)
	Six3	SIX homeobox 3a. (341 aa)
	LOC103471241	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (437 aa)
	LOC103481539	SIX homeobox 3b. (277 aa)
	hmga1	Uncharacterized protein. (95 aa)
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (617 aa)
	CNOT2	CCR4-NOT transcription complex subunit 2. (522 aa)
	LOC103468746	Nuclear receptor subfamily 5, group A, member 5. (501 aa)
	LOC103481571	Uncharacterized protein. (1016 aa)
	ENSPREP00000011180	Nuclear receptor subfamily 5, group A, member 2. (465 aa)
	crebbp	CREB binding protein b. (2452 aa)
	znf644	Zinc finger protein 644a. (1142 aa)
	ENSPREP00000011378	THAP-type domain-containing protein. (74 aa)
	sp1	Sp1 transcription factor. (593 aa)
	LOC103467586	Vestigial-like family member 4a. (248 aa)
	ENSPREP00000013992	Uncharacterized protein. (686 aa)
	LOC103467002	Nuclear receptor subfamily 1, group H, member 5. (494 aa)
	LOC103479176	JunD proto-oncogene, AP-1 transcription factor subunit. (298 aa)
	LOC103468942	Elongin B. (117 aa)
	ctbp1	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (423 aa)
	LOC103470615	Vestigial like 4 like. (254 aa)
	med25	Mediator complex subunit 25. (748 aa)
	PER2	Period circadian regulator 2. (1494 aa)
	JUND	BZIP domain-containing protein. (302 aa)
	LOC103476756	Uncharacterized protein. (1177 aa)
	LOC103480497	Period circadian clock 1b. (1441 aa)
	LOC103473114	Uncharacterized protein. (439 aa)
	LOC103460214	Uncharacterized protein. (269 aa)
	GATA2	GATA binding protein 2. (462 aa)
	LOC103469458	Nuclear receptor subfamily 1, group d, member 1. (523 aa)
	LOC103460975	Vestigial-like family member 4b. (294 aa)
	ENSPREP00000018595	Uncharacterized protein. (128 aa)
	HDGF	PWWP domain-containing protein. (101 aa)
	ENSPREP00000019591	SET domain-containing protein. (152 aa)
	LOC103473773	Mothers against decapentaplegic homolog. (503 aa)
	HAND1	Heart and neural crest derivatives expressed 1. (212 aa)
	phf12	PHD finger protein 12b. (1007 aa)
	BAIAP2	BAI1 associated protein 2. (569 aa)
	LOC103477474	Mothers against decapentaplegic homolog. (534 aa)
	six6	SIX homeobox 6a. (245 aa)
	LOC103469600	Citron rho-interacting serine/threonine kinase b. (1537 aa)
	eed	Embryonic ectoderm development. (443 aa)
	znf618	Zinc finger protein 618. (852 aa)
	LOC103470136	cAMP responsive element binding protein 3-like 3 like. (496 aa)
	LOC103465060	GATA binding protein 2a. (456 aa)
	nr1h4	Nuclear receptor subfamily 1, group H, member 4. (485 aa)
	LOC103468460	E1A binding protein p300 b. (2737 aa)
	SMAD4	Mothers against decapentaplegic homolog. (439 aa)
	zbtb49	Zinc finger and BTB domain containing 49. (793 aa)
	LOC103480795	Uncharacterized protein. (996 aa)
	LOC103473948	Euchromatic histone-lysine N-methyltransferase 1b. (1272 aa)
	LOC103467373	Nuclear receptor subfamily 1, group D, member 4a. (585 aa)
	LOC103466190	CCR4-NOT transcription complex, subunit 2. (660 aa)
	LOC103475709	Androgen receptor. (757 aa)
	LOC103482005	E1A binding protein p300 a. (2743 aa)
	ar	Androgen receptor. (685 aa)
	LOC103464971	Citron Rho-interacting kinase; Plays a role in cytokinesis. Displays serine/threonine protein kinase activity; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1972 aa)
	LOC103465552	GATA binding protein 1a. (426 aa)
	LOC103457879	Uncharacterized protein. (801 aa)
	ppard	Peroxisome proliferator-activated receptor delta b. (401 aa)
	ENSPREP00000033818	Protein kinase domain-containing protein. (284 aa)
	ELOB	Elongin B. (119 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAIAP2	LOC103468820	ENSPREP00000022196	ENSPREP00000004709	BAI1 associated protein 2.	BAI1-associated protein 2a.	0.901
CNOT2	LOC103466190	ENSPREP00000008848	ENSPREP00000030729	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 2.	0.901
ELOB	LOC103468942	ENSPREP00000034053	ENSPREP00000015457	Elongin B.	Elongin B.	0.901
ENSPREP00000011180	GATA2	ENSPREP00000011180	ENSPREP00000018023	Nuclear receptor subfamily 5, group A, member 2.	GATA binding protein 2.	0.434
ENSPREP00000011180	LOC103465060	ENSPREP00000011180	ENSPREP00000026296	Nuclear receptor subfamily 5, group A, member 2.	GATA binding protein 2a.	0.434
ENSPREP00000011180	LOC103467002	ENSPREP00000011180	ENSPREP00000014015	Nuclear receptor subfamily 5, group A, member 2.	Nuclear receptor subfamily 1, group H, member 5.	0.463
ENSPREP00000011180	nr1h4	ENSPREP00000011180	ENSPREP00000026448	Nuclear receptor subfamily 5, group A, member 2.	Nuclear receptor subfamily 1, group H, member 4.	0.463
ENSPREP00000011378	ENSPREP00000019591	ENSPREP00000011378	ENSPREP00000019591	THAP-type domain-containing protein.	SET domain-containing protein.	0.411
ENSPREP00000011378	LOC103473948	ENSPREP00000011378	ENSPREP00000030120	THAP-type domain-containing protein.	Euchromatic histone-lysine N-methyltransferase 1b.	0.411
ENSPREP00000011378	ehmt2	ENSPREP00000011378	ENSPREP00000003334	THAP-type domain-containing protein.	Euchromatic histone-lysine N-methyltransferase 2.	0.411
ENSPREP00000013992	ENSPREP00000019591	ENSPREP00000013992	ENSPREP00000019591	Uncharacterized protein.	SET domain-containing protein.	0.491
ENSPREP00000013992	ENSPREP00000019608	ENSPREP00000013992	ENSPREP00000019608	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.467
ENSPREP00000013992	LOC103473948	ENSPREP00000013992	ENSPREP00000030120	Uncharacterized protein.	Euchromatic histone-lysine N-methyltransferase 1b.	0.491
ENSPREP00000013992	ehmt2	ENSPREP00000013992	ENSPREP00000003334	Uncharacterized protein.	Euchromatic histone-lysine N-methyltransferase 2.	0.491
ENSPREP00000019591	ENSPREP00000011378	ENSPREP00000019591	ENSPREP00000011378	SET domain-containing protein.	THAP-type domain-containing protein.	0.411
ENSPREP00000019591	ENSPREP00000013992	ENSPREP00000019591	ENSPREP00000013992	SET domain-containing protein.	Uncharacterized protein.	0.491
ENSPREP00000019591	ENSPREP00000019608	ENSPREP00000019591	ENSPREP00000019608	SET domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.824
ENSPREP00000019591	LOC103464523	ENSPREP00000019591	ENSPREP00000000700	SET domain-containing protein.	Si:dkey-217d24.6.	0.491
ENSPREP00000019591	eed	ENSPREP00000019591	ENSPREP00000023484	SET domain-containing protein.	Embryonic ectoderm development.	0.584
ENSPREP00000019591	znf644	ENSPREP00000019591	ENSPREP00000011360	SET domain-containing protein.	Zinc finger protein 644a.	0.411