(83 nodes) Neuron migration network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103475562	Doublecortin-like kinase 1a. (722 aa)
	dcx	Uncharacterized protein. (359 aa)
	lrrc1	Leucine rich repeat containing 1. (522 aa)
	barhl1	Homeobox domain-containing protein. (325 aa)
	gas6	Uncharacterized protein. (650 aa)
	LOC103476954	Dorsal root ganglia homeobox. (254 aa)
	dab1	DAB adaptor protein 1a. (554 aa)
	astn1	Astrotactin 1. (1066 aa)
	LOC103481979	Integrin, alpha 3b; Belongs to the integrin alpha chain family. (1089 aa)
	dnaaf4	Dynein axonemal assembly factor 4. (407 aa)
	NAV1	Neuron navigator 1. (2275 aa)
	cntn2	Contactin 2. (1034 aa)
	LOC103462031	Cyclin-dependent kinase-like 5. (1144 aa)
	adgra3	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family. (1350 aa)
	sh3rf1	SH3 domain containing ring finger 1. (849 aa)
	ndnf	Neuron-derived neurotrophic factor. (571 aa)
	CDKL5	Cyclin dependent kinase like 5. (967 aa)
	cck	Gastrin domain-containing protein. (137 aa)
	LOC103465060	GATA binding protein 2a. (456 aa)
	ADGRL3	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family. (1547 aa)
	RELN	Reelin. (3446 aa)
	ASTN2	Astrotactin 2. (1371 aa)
	ENSPREP00000023825	SH2 domain-containing protein. (93 aa)
	LOC103460449	Neuropilin; Belongs to the neuropilin family. (936 aa)
	ENSPREP00000023272	Uncharacterized protein. (267 aa)
	lhx1	LIM homeobox 1a. (374 aa)
	MDGA2	MAM domain containing glycosylphosphatidylinositol anchor 2. (947 aa)
	kiaa0319	Si:ch73-215d9.1. (778 aa)
	ENSPREP00000021715	Uncharacterized protein. (790 aa)
	LOC103475525	FAT atypical cadherin 3b. (4248 aa)
	barhl2	BarH-like homeobox 2. (363 aa)
	pex7	Peroxisomal biogenesis factor 7. (340 aa)
	tubgcp2	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (875 aa)
	LOC103478316	Cholecystokinin a. (131 aa)
	ENSPREP00000019795	Ig-like domain-containing protein. (130 aa)
	ENSPREP00000019743	Uncharacterized protein. (760 aa)
	LOC103474972	Doublecortin-like kinase 1b. (747 aa)
	celsr3	Cadherin, EGF LAG seven-pass G-type receptor 3; Belongs to the G-protein coupled receptor 2 family. (3941 aa)
	cdk5r1	Cyclin-dependent kinase 5 activator. (450 aa)
	ENSPREP00000018776	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (824 aa)
	LOC103464711	Neuron navigator 1b. (1719 aa)
	LOC103469022	Uncharacterized protein; Belongs to the integrin alpha chain family. (900 aa)
	GATA2	GATA binding protein 2. (462 aa)
	vegfa	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family. (214 aa)
	LOC103477376	Forkhead box G1d. (344 aa)
	LOC103468291	Cyclin-dependent kinase 5 activator. (334 aa)
	alkbh1	AlkB homolog 1, histone H2A dioxygenase. (380 aa)
	rest	RE1-silencing transcription factor. (902 aa)
	Pomgnt2	Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-). (594 aa)
	LOC103469185	Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family. (1596 aa)
	gpm6a	Glycoprotein M6Aa. (278 aa)
	pcm1	Pericentriolar material 1. (2112 aa)
	cep85l	Centrosomal protein 85, like. (476 aa)
	VANGL2	VANGL planar cell polarity protein 2. (691 aa)
	bbs1	Bardet-Biedl syndrome 1. (583 aa)
	LOC103458078	Uncharacterized protein. (1083 aa)
	ENSPREP00000004156	Homeobox domain-containing protein. (201 aa)
	foxg1	Forkhead box G1a. (346 aa)
	mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1. (952 aa)
	ENSPREP00000005063	Uncharacterized protein. (468 aa)
	LOC103478981	DAB adaptor protein 1b. (572 aa)
	LOC103474746	Fork-head domain-containing protein. (389 aa)
	GPM6A	Glycoprotein M6Ab. (292 aa)
	celsr2	Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family. (3043 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (865 aa)
	scrib	Scribble planar cell polarity protein. (1718 aa)
	SRF	Serum response factor. (243 aa)
	neo1	Neogenin 1. (1402 aa)
	bbs4	Bardet-Biedl syndrome 4. (520 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (310 aa)
	supt5h	Transcription elongation factor SPT5. (1059 aa)
	phox2b	Paired like homeobox 2Bb. (285 aa)
	rapgef2	Rap guanine nucleotide exchange factor (GEF) 2. (1615 aa)
	cdk5	Cyclin-dependent kinase 5. (262 aa)
	celsr1	Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family. (3091 aa)
	ENSPREP00000012400	Uncharacterized protein. (550 aa)
	LOC103480354	Vang-like protein. (525 aa)
	LOC103473007	Cyclin-dependent kinase 5 activator. (321 aa)
	srf	Serum response factor b. (570 aa)
	BAX	BCL2 associated X, apoptosis regulator. (191 aa)
	crk	CRK proto-oncogene, adaptor protein. (315 aa)
	auts2	Activator of transcription and developmental regulator AUTS2 a. (1283 aa)
	kiaa0319l	Si:ch211-193k19.1. (809 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL3	adgra3	ENSPREP00000025948	ENSPREP00000028222	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	0.596
ADGRL3	lrrc1	ENSPREP00000025948	ENSPREP00000032724	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 1.	0.588
ADGRL3	scrib	ENSPREP00000025948	ENSPREP00000008445	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Scribble planar cell polarity protein.	0.588
ENSPREP00000005063	ENSPREP00000021715	ENSPREP00000005063	ENSPREP00000021715	Uncharacterized protein.	Uncharacterized protein.	0.559
ENSPREP00000005063	LOC103475525	ENSPREP00000005063	ENSPREP00000021265	Uncharacterized protein.	FAT atypical cadherin 3b.	0.472
ENSPREP00000012400	bbs4	ENSPREP00000012400	ENSPREP00000009421	Uncharacterized protein.	Bardet-Biedl syndrome 4.	0.479
ENSPREP00000012400	pcm1	ENSPREP00000012400	ENSPREP00000000099	Uncharacterized protein.	Pericentriolar material 1.	0.488
ENSPREP00000019743	ENSPREP00000019795	ENSPREP00000019743	ENSPREP00000019795	Uncharacterized protein.	Ig-like domain-containing protein.	0.841
ENSPREP00000019795	ENSPREP00000019743	ENSPREP00000019795	ENSPREP00000019743	Ig-like domain-containing protein.	Uncharacterized protein.	0.841
ENSPREP00000021715	ENSPREP00000005063	ENSPREP00000021715	ENSPREP00000005063	Uncharacterized protein.	Uncharacterized protein.	0.559
ENSPREP00000021715	LOC103475525	ENSPREP00000021715	ENSPREP00000021265	Uncharacterized protein.	FAT atypical cadherin 3b.	0.474
ENSPREP00000023272	LOC103468291	ENSPREP00000023272	ENSPREP00000017469	Uncharacterized protein.	Cyclin-dependent kinase 5 activator.	0.418
ENSPREP00000023272	LOC103473007	ENSPREP00000023272	ENSPREP00000012825	Uncharacterized protein.	Cyclin-dependent kinase 5 activator.	0.422
ENSPREP00000023272	cdk5	ENSPREP00000023272	ENSPREP00000011776	Uncharacterized protein.	Cyclin-dependent kinase 5.	0.928
ENSPREP00000023272	cdk5r1	ENSPREP00000023272	ENSPREP00000018796	Uncharacterized protein.	Cyclin-dependent kinase 5 activator.	0.412
ENSPREP00000023825	LOC103481979	ENSPREP00000023825	ENSPREP00000029873	SH2 domain-containing protein.	Integrin, alpha 3b; Belongs to the integrin alpha chain family.	0.747
ENSPREP00000023825	crk	ENSPREP00000023825	ENSPREP00000013741	SH2 domain-containing protein.	CRK proto-oncogene, adaptor protein.	0.901
ENSPREP00000023825	crkl	ENSPREP00000023825	ENSPREP00000009681	SH2 domain-containing protein.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.909
LOC103460449	vegfa	ENSPREP00000023534	ENSPREP00000017968	Neuropilin; Belongs to the neuropilin family.	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	0.549
LOC103468291	ENSPREP00000023272	ENSPREP00000017469	ENSPREP00000023272	Cyclin-dependent kinase 5 activator.	Uncharacterized protein.	0.418