(13 nodes) Fructose metabolic process network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103468054	6PF2K domain-containing protein. (470 aa)
	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2a. (529 aa)
	LOC103465241	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b. (474 aa)
	pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2b. (537 aa)
	pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3. (535 aa)
	khk	Ketohexokinase. (274 aa)
	LOC103470743	Fructose-1,6-bisphosphatase 2; Belongs to the FBPase class 1 family. (333 aa)
	LOC103470739	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family. (338 aa)
	sord	Sorbitol dehydrogenase. (354 aa)
	LOC103467867	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1. (470 aa)
	LOC103473350	Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family. (337 aa)
	LOC103465076	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4a. (505 aa)
	tkfc	Triokinase/FMN cyclase. (583 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103465076	LOC103470739	ENSPREP00000025034	ENSPREP00000023806	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4a.	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	0.791
LOC103465076	LOC103470743	ENSPREP00000025034	ENSPREP00000023859	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4a.	Fructose-1,6-bisphosphatase 2; Belongs to the FBPase class 1 family.	0.791
LOC103465076	LOC103473350	ENSPREP00000025034	ENSPREP00000030296	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4a.	Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family.	0.791
LOC103465241	LOC103470739	ENSPREP00000017911	ENSPREP00000023806	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b.	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	0.791
LOC103465241	LOC103470743	ENSPREP00000017911	ENSPREP00000023859	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b.	Fructose-1,6-bisphosphatase 2; Belongs to the FBPase class 1 family.	0.791
LOC103465241	LOC103473350	ENSPREP00000017911	ENSPREP00000030296	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b.	Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family.	0.791
LOC103467867	LOC103470739	ENSPREP00000030686	ENSPREP00000023806	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1.	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	0.791
LOC103467867	LOC103470743	ENSPREP00000030686	ENSPREP00000023859	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1.	Fructose-1,6-bisphosphatase 2; Belongs to the FBPase class 1 family.	0.791
LOC103467867	LOC103473350	ENSPREP00000030686	ENSPREP00000030296	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1.	Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family.	0.791
LOC103468054	LOC103470739	ENSPREP00000002898	ENSPREP00000023806	6PF2K domain-containing protein.	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	0.791
LOC103468054	LOC103470743	ENSPREP00000002898	ENSPREP00000023859	6PF2K domain-containing protein.	Fructose-1,6-bisphosphatase 2; Belongs to the FBPase class 1 family.	0.791
LOC103468054	LOC103473350	ENSPREP00000002898	ENSPREP00000030296	6PF2K domain-containing protein.	Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family.	0.791
LOC103470739	LOC103465076	ENSPREP00000023806	ENSPREP00000025034	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4a.	0.791
LOC103470739	LOC103465241	ENSPREP00000023806	ENSPREP00000017911	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b.	0.791
LOC103470739	LOC103467867	ENSPREP00000023806	ENSPREP00000030686	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1.	0.791
LOC103470739	LOC103468054	ENSPREP00000023806	ENSPREP00000002898	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	6PF2K domain-containing protein.	0.791
LOC103470739	LOC103470743	ENSPREP00000023806	ENSPREP00000023859	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	Fructose-1,6-bisphosphatase 2; Belongs to the FBPase class 1 family.	0.901
LOC103470739	LOC103473350	ENSPREP00000023806	ENSPREP00000030296	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family.	0.900
LOC103470739	PFKFB2	ENSPREP00000023806	ENSPREP00000009001	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2a.	0.791
LOC103470739	pfkfb2	ENSPREP00000023806	ENSPREP00000020336	Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2b.	0.791