36 items (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPREP00000001027	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (467 aa)
	cdk13	Cyclin-dependent kinase 13. (1409 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	LOC103462177	Uncharacterized protein. (662 aa)
	cdc73	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (576 aa)
	LOC103466632	Si:ch211-13k12.2. (602 aa)
	supt5h	Transcription elongation factor SPT5. (1059 aa)
	eloa	Elongin A. (681 aa)
	LOC103478445	Transcription elongation factor A (SII), 3. (562 aa)
	supt16h	SPT16 homolog, facilitates chromatin remodeling subunit. (1077 aa)
	ell	Elongation factor RNA polymerase II. (611 aa)
	polr1e	RNA polymerase I subunit E. (414 aa)
	supt6h	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1825 aa)
	LOC103458470	Uncharacterized protein. (627 aa)
	LOC103468942	Elongin B. (117 aa)
	paf1	PAF1 homolog, Paf1/RNA polymerase II complex component. (531 aa)
	cdk12	Cyclin-dependent kinase 12. (1352 aa)
	wdr61	WD repeat domain 61. (305 aa)
	LOC103468483	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
	ELOF1	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
	eny2	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (95 aa)
	tefm	Transcription elongation factor, mitochondrial. (375 aa)
	tcea1	Transcription elongation factor A (SII), 1. (320 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (631 aa)
	rtf1	RTF1 homolog, Paf1/RNA polymerase II complex component. (663 aa)
	ercc2	Excision repair cross-complementation group 2. (655 aa)
	LOC103467918	Transcription elongation factor A (SII), 2. (369 aa)
	ENSPREP00000030719	Uncharacterized protein. (708 aa)
	ell2	Elongation factor, RNA polymerase II, 2. (670 aa)
	ENSPREP00000031297	AIG1-type G domain-containing protein. (533 aa)
	ENSPREP00000031307	Thioredoxin_11 domain-containing protein. (508 aa)
	ercc6	Excision repair cross-complementation group 6. (1402 aa)
	ENSPREP00000032704	TFIIS N-terminal domain-containing protein. (269 aa)
	Pcid2	PCI domain-containing protein. (644 aa)
	ELOB	Elongin B. (119 aa)
	ctr9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1154 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOB	ENSPREP00000001027	ENSPREP00000034053	ENSPREP00000001027	Elongin B.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.631
ELOB	ENSPREP00000032704	ENSPREP00000034053	ENSPREP00000032704	Elongin B.	TFIIS N-terminal domain-containing protein.	0.803
ELOB	LOC103458470	ENSPREP00000034053	ENSPREP00000014702	Elongin B.	Uncharacterized protein.	0.588
ELOB	LOC103462177	ENSPREP00000034053	ENSPREP00000007478	Elongin B.	Uncharacterized protein.	0.588
ELOB	LOC103466632	ENSPREP00000034053	ENSPREP00000009693	Elongin B.	Si:ch211-13k12.2.	0.588
ELOB	LOC103467918	ENSPREP00000034053	ENSPREP00000028757	Elongin B.	Transcription elongation factor A (SII), 2.	0.456
ELOB	LOC103468942	ENSPREP00000034053	ENSPREP00000015457	Elongin B.	Elongin B.	0.901
ELOB	LOC103478445	ENSPREP00000034053	ENSPREP00000012541	Elongin B.	Transcription elongation factor A (SII), 3.	0.456
ELOB	cdc73	ENSPREP00000034053	ENSPREP00000008375	Elongin B.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.768
ELOB	ctr9	ENSPREP00000034053	ENSPREP00000034132	Elongin B.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.751
ELOB	ell	ENSPREP00000034053	ENSPREP00000013343	Elongin B.	Elongation factor RNA polymerase II.	0.588
ELOB	ell2	ENSPREP00000034053	ENSPREP00000030782	Elongin B.	Elongation factor, RNA polymerase II, 2.	0.588
ELOB	eloa	ENSPREP00000034053	ENSPREP00000011960	Elongin B.	Elongin A.	0.868
ELOB	leo1	ENSPREP00000034053	ENSPREP00000027692	Elongin B.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.967
ELOB	paf1	ENSPREP00000034053	ENSPREP00000015516	Elongin B.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.731
ELOB	polr2i	ENSPREP00000034053	ENSPREP00000006073	Elongin B.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.660
ELOB	supt16h	ENSPREP00000034053	ENSPREP00000013238	Elongin B.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.731
ELOB	tcea1	ENSPREP00000034053	ENSPREP00000024128	Elongin B.	Transcription elongation factor A (SII), 1.	0.456
ELOB	wdr61	ENSPREP00000034053	ENSPREP00000018939	Elongin B.	WD repeat domain 61.	0.680
ELOF1	cdc73	ENSPREP00000019683	ENSPREP00000008375	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.771