18 items (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	lipe	Lipase, hormone-sensitive b. (825 aa)
	taf1b	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (545 aa)
	ttf1	Uncharacterized protein. (540 aa)
	LOC103475151	Uncharacterized protein. (340 aa)
	ercc2	Excision repair cross-complementation group 2. (655 aa)
	znrd1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
	ercc6	Excision repair cross-complementation group 6. (1402 aa)
	LOC103460486	Upstream binding transcription factor, like. (701 aa)
	polr1a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1695 aa)
	LOC103482185	Caveolae associated protein 1b. (397 aa)
	polr1c	RNA polymerase I and III subunit C. (346 aa)
	LOC103473021	Lipase, hormone-sensitive a. (682 aa)
	polr1e	RNA polymerase I subunit E. (414 aa)
	ubtf	Upstream binding transcription factor. (736 aa)
	LOC103469402	Caveolae associated protein 1a. (393 aa)
	rrn3	RRN3 homolog, RNA polymerase I transcription factor. (610 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (550 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103460486	LOC103475151	ENSPREP00000001918	ENSPREP00000028018	Upstream binding transcription factor, like.	Uncharacterized protein.	0.576
LOC103460486	ercc2	ENSPREP00000001918	ENSPREP00000028527	Upstream binding transcription factor, like.	Excision repair cross-complementation group 2.	0.656
LOC103460486	ercc6	ENSPREP00000001918	ENSPREP00000031633	Upstream binding transcription factor, like.	Excision repair cross-complementation group 6.	0.526
LOC103460486	gtf2h1	ENSPREP00000001918	ENSPREP00000019946	Upstream binding transcription factor, like.	General transcription factor IIH, polypeptide 1.	0.714
LOC103460486	polr1a	ENSPREP00000001918	ENSPREP00000003406	Upstream binding transcription factor, like.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.740
LOC103460486	polr1c	ENSPREP00000001918	ENSPREP00000011742	Upstream binding transcription factor, like.	RNA polymerase I and III subunit C.	0.656
LOC103460486	polr1e	ENSPREP00000001918	ENSPREP00000013941	Upstream binding transcription factor, like.	RNA polymerase I subunit E.	0.767
LOC103460486	polr2l	ENSPREP00000001918	ENSPREP00000033875	Upstream binding transcription factor, like.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.572
LOC103460486	rrn3	ENSPREP00000001918	ENSPREP00000016699	Upstream binding transcription factor, like.	RRN3 homolog, RNA polymerase I transcription factor.	0.717
LOC103460486	taf1b	ENSPREP00000001918	ENSPREP00000021905	Upstream binding transcription factor, like.	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	0.590
LOC103460486	ttf1	ENSPREP00000001918	ENSPREP00000024064	Upstream binding transcription factor, like.	Uncharacterized protein.	0.612
LOC103460486	znrd1	ENSPREP00000001918	ENSPREP00000029138	Upstream binding transcription factor, like.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.547
LOC103469402	polr1a	ENSPREP00000014515	ENSPREP00000003406	Caveolae associated protein 1a.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.558
LOC103469402	ttf1	ENSPREP00000014515	ENSPREP00000024064	Caveolae associated protein 1a.	Uncharacterized protein.	0.639
LOC103473021	lipe	ENSPREP00000013233	ENSPREP00000021641	Lipase, hormone-sensitive a.	Lipase, hormone-sensitive b.	0.901
LOC103475151	LOC103460486	ENSPREP00000028018	ENSPREP00000001918	Uncharacterized protein.	Upstream binding transcription factor, like.	0.576
LOC103475151	ercc2	ENSPREP00000028018	ENSPREP00000028527	Uncharacterized protein.	Excision repair cross-complementation group 2.	0.671
LOC103475151	ercc6	ENSPREP00000028018	ENSPREP00000031633	Uncharacterized protein.	Excision repair cross-complementation group 6.	0.539
LOC103475151	polr1a	ENSPREP00000028018	ENSPREP00000003406	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
LOC103475151	polr1c	ENSPREP00000028018	ENSPREP00000011742	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.998