(26 nodes) Retina layer formation network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPREP00000018829	Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 3. (552 aa)
	LOC103462363	Uncharacterized protein. (1913 aa)
	atoh7	Atonal bHLH transcription factor 7. (133 aa)
	ENSPREP00000005063	Uncharacterized protein. (468 aa)
	LOC103468816	Sidekick cell adhesion molecule 2a. (2156 aa)
	rtn4ip1	Reticulon 4 interacting protein 1. (413 aa)
	LOC103467652	Uncharacterized protein. (1261 aa)
	ENSPREP00000008634	Uncharacterized protein. (690 aa)
	sdk2	Sidekick cell adhesion molecule 2b. (2033 aa)
	LOC103463303	Crumbs cell polarity complex component 1. (1334 aa)
	LOC103464716	Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 2. (1184 aa)
	LOC103464718	Uncharacterized protein. (1469 aa)
	abhd12	Abhydrolase domain containing 12. (289 aa)
	crb2	Crumbs cell polarity complex component 2b. (1343 aa)
	LOC103473166	Uncharacterized protein. (1465 aa)
	LOC103475525	FAT atypical cadherin 3b. (4248 aa)
	lhx1	LIM homeobox 1a. (374 aa)
	ENSPREP00000022685	Abelson helper integration site 1. (907 aa)
	rp2	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (370 aa)
	LOC103464089	Retinal homeobox gene 1. (343 aa)
	RS1	Retinoschisin 1. (181 aa)
	ENSPREP00000028029	Tetraspanin. (218 aa)
	fjx1	Four-jointed box kinase 1. (427 aa)
	ENSPREP00000028725	F5/8 type C domain-containing protein. (177 aa)
	tatdn1	TatD DNase domain containing 1. (314 aa)
	foxn4	Forkhead box N4. (500 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000005063	LOC103475525	ENSPREP00000005063	ENSPREP00000021265	Uncharacterized protein.	FAT atypical cadherin 3b.	0.472
ENSPREP00000005063	fjx1	ENSPREP00000005063	ENSPREP00000028346	Uncharacterized protein.	Four-jointed box kinase 1.	0.628
LOC103475525	ENSPREP00000005063	ENSPREP00000021265	ENSPREP00000005063	FAT atypical cadherin 3b.	Uncharacterized protein.	0.472
LOC103475525	fjx1	ENSPREP00000021265	ENSPREP00000028346	FAT atypical cadherin 3b.	Four-jointed box kinase 1.	0.628
atoh7	foxn4	ENSPREP00000003811	ENSPREP00000033227	Atonal bHLH transcription factor 7.	Forkhead box N4.	0.493
fjx1	ENSPREP00000005063	ENSPREP00000028346	ENSPREP00000005063	Four-jointed box kinase 1.	Uncharacterized protein.	0.628
fjx1	LOC103475525	ENSPREP00000028346	ENSPREP00000021265	Four-jointed box kinase 1.	FAT atypical cadherin 3b.	0.628
foxn4	atoh7	ENSPREP00000033227	ENSPREP00000003811	Forkhead box N4.	Atonal bHLH transcription factor 7.	0.493