(18 nodes) Bile acid and bile salt transport network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	slc10a2	Solute carrier family 10 member 2. (358 aa)
	fgf19	Fibroblast growth factor 19; Belongs to the heparin-binding growth factors family. (196 aa)
	SLCO1C1	Solute carrier organic anion transporter family member. (703 aa)
	abcd3	ATP-binding cassette, sub-family D (ALD), member 3a. (659 aa)
	LOC103459541	Solute carrier organic anion transporter family member. (710 aa)
	LOC103459540	Solute carrier organic anion transporter family member. (684 aa)
	LOC103459539	Solute carrier organic anion transporter family member. (689 aa)
	nr0b2	Nuclear receptor subfamily 0, group B, member 2a. (260 aa)
	LOC103457349	Solute carrier family 10 member 1. (334 aa)
	vps18	VPS18 core subunit of CORVET and HOPS complexes. (982 aa)
	LOC103482448	Solute carrier family 51 alpha subunit. (323 aa)
	slc10a4	Solute carrier family 10 member 4. (414 aa)
	LOC103458516	Uncharacterized protein. (356 aa)
	LOC103475431	Uncharacterized protein. (329 aa)
	LOC103476915	Uncharacterized protein. (1551 aa)
	LOC103476920	Uncharacterized protein. (1444 aa)
	LOC103466846	Solute carrier family 10 member 3. (454 aa)
	LOC103474526	Solute carrier organic anion transporter family member. (702 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103457349	nr0b2	ENSPREP00000015362	ENSPREP00000013093	Solute carrier family 10 member 1.	Nuclear receptor subfamily 0, group B, member 2a.	0.462
LOC103458516	nr0b2	ENSPREP00000029278	ENSPREP00000013093	Uncharacterized protein.	Nuclear receptor subfamily 0, group B, member 2a.	0.462
LOC103475431	fgf19	ENSPREP00000029393	ENSPREP00000002527	Uncharacterized protein.	Fibroblast growth factor 19; Belongs to the heparin-binding growth factors family.	0.532
LOC103475431	nr0b2	ENSPREP00000029393	ENSPREP00000013093	Uncharacterized protein.	Nuclear receptor subfamily 0, group B, member 2a.	0.474
fgf19	LOC103475431	ENSPREP00000002527	ENSPREP00000029393	Fibroblast growth factor 19; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.532
fgf19	nr0b2	ENSPREP00000002527	ENSPREP00000013093	Fibroblast growth factor 19; Belongs to the heparin-binding growth factors family.	Nuclear receptor subfamily 0, group B, member 2a.	0.577
nr0b2	LOC103457349	ENSPREP00000013093	ENSPREP00000015362	Nuclear receptor subfamily 0, group B, member 2a.	Solute carrier family 10 member 1.	0.462
nr0b2	LOC103458516	ENSPREP00000013093	ENSPREP00000029278	Nuclear receptor subfamily 0, group B, member 2a.	Uncharacterized protein.	0.462
nr0b2	LOC103475431	ENSPREP00000013093	ENSPREP00000029393	Nuclear receptor subfamily 0, group B, member 2a.	Uncharacterized protein.	0.474
nr0b2	fgf19	ENSPREP00000013093	ENSPREP00000002527	Nuclear receptor subfamily 0, group B, member 2a.	Fibroblast growth factor 19; Belongs to the heparin-binding growth factors family.	0.577