(5 nodes) Protein import into peroxisome matrix, docking network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPREP00000022666	Peroxisomal biogenesis factor 5-like a. (491 aa)
	LOC103460472	Peroxisomal biogenesis factor 5-like b. (563 aa)
	pex5	Peroxisomal biogenesis factor 5. (639 aa)
	fam185a	Family with sequence similarity 185 member A. (386 aa)
	pex14	Peroxisomal biogenesis factor 14. (374 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000022666	fam185a	ENSPREP00000022666	ENSPREP00000024036	Peroxisomal biogenesis factor 5-like a.	Family with sequence similarity 185 member A.	0.883
ENSPREP00000022666	pex14	ENSPREP00000022666	ENSPREP00000023963	Peroxisomal biogenesis factor 5-like a.	Peroxisomal biogenesis factor 14.	0.955
LOC103460472	fam185a	ENSPREP00000001447	ENSPREP00000024036	Peroxisomal biogenesis factor 5-like b.	Family with sequence similarity 185 member A.	0.883
LOC103460472	pex14	ENSPREP00000001447	ENSPREP00000023963	Peroxisomal biogenesis factor 5-like b.	Peroxisomal biogenesis factor 14.	0.995
fam185a	ENSPREP00000022666	ENSPREP00000024036	ENSPREP00000022666	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 5-like a.	0.883
fam185a	LOC103460472	ENSPREP00000024036	ENSPREP00000001447	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 5-like b.	0.883
fam185a	pex5	ENSPREP00000024036	ENSPREP00000018308	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 5.	0.883
pex14	ENSPREP00000022666	ENSPREP00000023963	ENSPREP00000022666	Peroxisomal biogenesis factor 14.	Peroxisomal biogenesis factor 5-like a.	0.955
pex14	LOC103460472	ENSPREP00000023963	ENSPREP00000001447	Peroxisomal biogenesis factor 14.	Peroxisomal biogenesis factor 5-like b.	0.995
pex14	pex5	ENSPREP00000023963	ENSPREP00000018308	Peroxisomal biogenesis factor 14.	Peroxisomal biogenesis factor 5.	0.972
pex5	fam185a	ENSPREP00000018308	ENSPREP00000024036	Peroxisomal biogenesis factor 5.	Family with sequence similarity 185 member A.	0.883
pex5	pex14	ENSPREP00000018308	ENSPREP00000023963	Peroxisomal biogenesis factor 5.	Peroxisomal biogenesis factor 14.	0.972