(13 nodes) Subpallium development network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gsx2	GS homeobox 2. (239 aa)
	zswim5	Zinc finger, SWIM-type containing 5. (1160 aa)
	bbs1	Bardet-Biedl syndrome 1. (583 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2573 aa)
	LOC103471076	Uncharacterized protein. (136 aa)
	LOC103475400	Janus kinase and microtubule interacting protein 2. (669 aa)
	ENSPREP00000006501	Uncharacterized protein. (235 aa)
	fgf16	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (190 aa)
	bbs4	Bardet-Biedl syndrome 4. (520 aa)
	mkks	McKusick-Kaufman syndrome. (576 aa)
	ZSWIM6	Zinc finger SWIM-type containing 6. (1133 aa)
	LOC103473262	Zinc finger, SWIM-type containing 6. (1134 aa)
	LOC103459124	Si:ch73-352p4.8. (487 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000006501	LOC103471076	ENSPREP00000006501	ENSPREP00000006476	Uncharacterized protein.	Uncharacterized protein.	0.946
LOC103471076	ENSPREP00000006501	ENSPREP00000006476	ENSPREP00000006501	Uncharacterized protein.	Uncharacterized protein.	0.946
bbs1	bbs4	ENSPREP00000001676	ENSPREP00000009421	Bardet-Biedl syndrome 1.	Bardet-Biedl syndrome 4.	0.991
bbs1	mkks	ENSPREP00000001676	ENSPREP00000010575	Bardet-Biedl syndrome 1.	McKusick-Kaufman syndrome.	0.433
bbs4	bbs1	ENSPREP00000009421	ENSPREP00000001676	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 1.	0.991
mkks	bbs1	ENSPREP00000010575	ENSPREP00000001676	McKusick-Kaufman syndrome.	Bardet-Biedl syndrome 1.	0.433