STRINGSTRING
LOC103461004 LOC103461004 polr1a polr1a polr1b polr1b polr2c polr2c LOC103459886 LOC103459886 twistnb twistnb LOC103482181 LOC103482181 taf13 taf13 polr3e polr3e taf6l taf6l polr2i polr2i ccnh ccnh gtf2h5 gtf2h5 supt3h supt3h Taf12 Taf12 polr3f polr3f primpol primpol taf11 taf11 polr3g polr3g cdc73 cdc73 LOC103472340 LOC103472340 POLR2E POLR2E ENSPREP00000010333 ENSPREP00000010333 prim1 prim1 polr2h polr2h polr2m polr2m ctr9 ctr9 ENSPREP00000034063 ENSPREP00000034063 polr2l polr2l taf6 taf6 prim2 prim2 LOC103475759 LOC103475759 LOC103470947 LOC103470947 taf5l taf5l polr2d polr2d MYO6 MYO6 ENSPREP00000031307 ENSPREP00000031307 ENSPREP00000031297 ENSPREP00000031297 ercc3 ercc3 gtf2f2 gtf2f2 taf8 taf8 gtf2h3 gtf2h3 znrd1 znrd1 gtf2h4 gtf2h4 LOC103456628 LOC103456628 ercc2 ercc2 rtf1 rtf1 LOC103472678 LOC103472678 LOC103475151 LOC103475151 leo1 leo1 gtf2a1 gtf2a1 rprd1b rprd1b polr3b polr3b rprd2 rprd2 taf10 taf10 Rprd2 Rprd2 polr3c polr3c ENSPREP00000025005 ENSPREP00000025005 LOC103466384 LOC103466384 polr2f polr2f ENSPREP00000024764 ENSPREP00000024764 polr2g polr2g LOC103465090 LOC103465090 pex2 pex2 pola2 pola2 LOC103481886 LOC103481886 recql5 recql5 polr3gl polr3gl mnat1 mnat1 Trrap Trrap ENSPREP00000022903 ENSPREP00000022903 polr2j polr2j gtf2e1 gtf2e1 pola1 pola1 polr3a polr3a gtf2h1 gtf2h1 polr2a polr2a wdr61 wdr61 LOC103470674 LOC103470674 LOC103457075 LOC103457075 taf7l taf7l polr2b polr2b taf2 taf2 gtf2e2 gtf2e2 paf1 paf1 tbp tbp znfx1 znfx1 polr1e polr1e gtf2a2 gtf2a2 ENSPREP00000012814 ENSPREP00000012814 Crcp Crcp polr1c polr1c rpap2 rpap2 polr3k polr3k taf3 taf3 TAF4 TAF4 ENSPREP00000011339 ENSPREP00000011339 gtf2b gtf2b polrmt polrmt polr3d polr3d taf5 taf5 ENSPREP00000001027 ENSPREP00000001027
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
LOC103461004General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (267 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1695 aa)
polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (273 aa)
LOC103459886TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (253 aa)
twistnbUncharacterized protein. (369 aa)
LOC103482181Uncharacterized protein. (387 aa)
taf13TATA-box binding protein associated factor 13. (188 aa)
polr3ePolymerase (RNA) III (DNA directed) polypeptide E. (669 aa)
taf6lTAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (639 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
supt3hSPT3 homolog, SAGA and STAGA complex component. (343 aa)
Taf12TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (159 aa)
polr3fDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (341 aa)
primpolPrimase and polymerase (DNA-directed). (525 aa)
taf11TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (196 aa)
polr3gPolymerase (RNA) III (DNA directed) polypeptide G. (160 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (576 aa)
LOC103472340Regulation of nuclear pre-mRNA domain containing 1A. (273 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
ENSPREP00000010333RNA_pol_Rbc25 domain-containing protein. (230 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (401 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
polr2mRNA polymerase II subunit M. (328 aa)
ctr9CTR9 homolog, Paf1/RNA polymerase II complex component. (1154 aa)
ENSPREP00000034063General transcription factor IIA, 1-like. (327 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
taf6TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (637 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (506 aa)
LOC103475759Transcription initiation factor TFIID subunit. (1985 aa)
LOC103470947RNA polymerase I and III subunit D. (114 aa)
taf5lTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (599 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (104 aa)
MYO6Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1214 aa)
ENSPREP00000031307Thioredoxin_11 domain-containing protein. (508 aa)
ENSPREP00000031297AIG1-type G domain-containing protein. (533 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (312 aa)
taf8TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (243 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (277 aa)
znrd1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (434 aa)
LOC103456628Si:ch211-140b10.6. (155 aa)
ercc2Excision repair cross-complementation group 2. (655 aa)
rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (663 aa)
LOC103472678Regulation of nuclear pre-mRNA domain containing 2a. (1089 aa)
LOC103475151Uncharacterized protein. (340 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (631 aa)
gtf2a1General transcription factor IIA, 1. (393 aa)
rprd1bRegulation of nuclear pre-mRNA domain containing 1B. (328 aa)
polr3bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
rprd2Regulation of nuclear pre-mRNA domain containing 2b. (1102 aa)
taf10TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (186 aa)
Rprd2CID domain-containing protein. (67 aa)
polr3cRNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (540 aa)
ENSPREP00000025005RNA polymerase II associated protein 1. (791 aa)
LOC103466384TAFH domain-containing protein. (863 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (98 aa)
ENSPREP00000024764Uncharacterized protein. (297 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
LOC103465090TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (852 aa)
pex2Peroxisomal biogenesis factor 2. (335 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (669 aa)
LOC103481886Uncharacterized protein. (302 aa)
recql5RecQ helicase-like 5. (1020 aa)
polr3glDNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (231 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
TrrapFATC domain-containing protein; Belongs to the PI3/PI4-kinase family. (325 aa)
ENSPREP00000022903Uncharacterized protein. (393 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
gtf2e1General transcription factor IIE, polypeptide 1, alpha. (462 aa)
pola1DNA polymerase. (1478 aa)
polr3aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1404 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
wdr61WD repeat domain 61. (305 aa)
LOC103470674General transcription factor IIH subunit. (420 aa)
LOC103457075Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (955 aa)
taf7lTAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (383 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
taf2TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1119 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
paf1PAF1 homolog, Paf1/RNA polymerase II complex component. (531 aa)
tbpTATA box binding protein. (301 aa)
znfx1Zinc finger, NFX1-type containing 1. (1816 aa)
polr1eRNA polymerase I subunit E. (414 aa)
gtf2a2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
ENSPREP00000012814Uncharacterized protein. (74 aa)
CrcpCalcitonin gene-related peptide-receptor component protein. (135 aa)
polr1cRNA polymerase I and III subunit C. (346 aa)
rpap2RNA polymerase II associated protein 2. (567 aa)
polr3kDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
taf3TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (896 aa)
TAF4TATA-box binding protein associated factor 4. (878 aa)
ENSPREP00000011339TAF4 domain-containing protein. (249 aa)
gtf2bGeneral transcription factor IIB. (318 aa)
polrmtDNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1322 aa)
polr3dPolymerase (RNA) III (DNA directed) polypeptide D. (391 aa)
taf5TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (745 aa)
ENSPREP00000001027Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (467 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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