STRINGSTRING
atm atm LOC103464804 LOC103464804 nhej1 nhej1 LOC103473172 LOC103473172 prkdc prkdc lig4 lig4 tcf7 tcf7 lef1 lef1 rag2 rag2 rag1 rag1 DCAF1 DCAF1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
atmNon-specific serine/threonine protein kinase. (3091 aa)
LOC103464804LisH domain-containing protein. (1582 aa)
nhej1Nonhomologous end-joining factor 1. (315 aa)
LOC103473172X-ray repair complementing defective repair in Chinese hamster cells 4. (340 aa)
prkdcProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (3907 aa)
lig4DNA ligase. (908 aa)
tcf7Transcription factor 7. (453 aa)
lef1Lymphoid enhancer-binding factor 1. (422 aa)
rag2Recombination activating gene 2. (533 aa)
rag1V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] (994 aa)
DCAF1DDB1 and CUL4 associated factor 1. (1356 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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