(9 nodes) Nucleotide-excision repair, DNA incision network (Poecilia reticulata)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	xpa	Xeroderma pigmentosum, complementation group A. (275 aa)
	ercc5	Excision repair cross-complementation group 5. (980 aa)
	ercc3	Excision repair cross-complementation group 3. (783 aa)
	ercc2	Excision repair cross-complementation group 2. (655 aa)
	bivm	Basic, immunoglobulin-like variable motif containing. (500 aa)
	ercc4	Excision repair cross-complementation group 4. (893 aa)
	ercc1	Excision repair cross-complementation group 1. (358 aa)
	ogg1	8-oxoguanine DNA glycosylase. (388 aa)
	nthl1	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (452 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bivm	ercc1	ENSPREP00000025122	ENSPREP00000015481	Basic, immunoglobulin-like variable motif containing.	Excision repair cross-complementation group 1.	0.853
bivm	ercc2	ENSPREP00000025122	ENSPREP00000028527	Basic, immunoglobulin-like variable motif containing.	Excision repair cross-complementation group 2.	0.946
bivm	ercc3	ENSPREP00000025122	ENSPREP00000030919	Basic, immunoglobulin-like variable motif containing.	Excision repair cross-complementation group 3.	0.955
bivm	ercc4	ENSPREP00000025122	ENSPREP00000024474	Basic, immunoglobulin-like variable motif containing.	Excision repair cross-complementation group 4.	0.871
bivm	ercc5	ENSPREP00000025122	ENSPREP00000032160	Basic, immunoglobulin-like variable motif containing.	Excision repair cross-complementation group 5.	0.664
bivm	nthl1	ENSPREP00000025122	ENSPREP00000000553	Basic, immunoglobulin-like variable motif containing.	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.	0.607
bivm	ogg1	ENSPREP00000025122	ENSPREP00000024234	Basic, immunoglobulin-like variable motif containing.	8-oxoguanine DNA glycosylase.	0.506
bivm	xpa	ENSPREP00000025122	ENSPREP00000000357	Basic, immunoglobulin-like variable motif containing.	Xeroderma pigmentosum, complementation group A.	0.829
ercc1	bivm	ENSPREP00000015481	ENSPREP00000025122	Excision repair cross-complementation group 1.	Basic, immunoglobulin-like variable motif containing.	0.853
ercc1	ercc2	ENSPREP00000015481	ENSPREP00000028527	Excision repair cross-complementation group 1.	Excision repair cross-complementation group 2.	0.873
ercc1	ercc3	ENSPREP00000015481	ENSPREP00000030919	Excision repair cross-complementation group 1.	Excision repair cross-complementation group 3.	0.872
ercc1	ercc4	ENSPREP00000015481	ENSPREP00000024474	Excision repair cross-complementation group 1.	Excision repair cross-complementation group 4.	0.999
ercc1	ercc5	ENSPREP00000015481	ENSPREP00000032160	Excision repair cross-complementation group 1.	Excision repair cross-complementation group 5.	0.853
ercc1	nthl1	ENSPREP00000015481	ENSPREP00000000553	Excision repair cross-complementation group 1.	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.	0.564
ercc1	ogg1	ENSPREP00000015481	ENSPREP00000024234	Excision repair cross-complementation group 1.	8-oxoguanine DNA glycosylase.	0.579
ercc1	xpa	ENSPREP00000015481	ENSPREP00000000357	Excision repair cross-complementation group 1.	Xeroderma pigmentosum, complementation group A.	0.984
ercc2	bivm	ENSPREP00000028527	ENSPREP00000025122	Excision repair cross-complementation group 2.	Basic, immunoglobulin-like variable motif containing.	0.946
ercc2	ercc1	ENSPREP00000028527	ENSPREP00000015481	Excision repair cross-complementation group 2.	Excision repair cross-complementation group 1.	0.873
ercc2	ercc3	ENSPREP00000028527	ENSPREP00000030919	Excision repair cross-complementation group 2.	Excision repair cross-complementation group 3.	0.999
ercc2	ercc4	ENSPREP00000028527	ENSPREP00000024474	Excision repair cross-complementation group 2.	Excision repair cross-complementation group 4.	0.879